Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 2.7e-61 238.4 117 100.0
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 7.5e-27 124.0 103 65.0
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 4.1e-25 118.2 109 58.7
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 4.6e-24 114.8 94 62.8
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 4.6e-24 114.8 94 62.8
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 6.6e-23 110.9 103 56.3
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 7.5e-19 97.4 93 54.8
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 2.9e-18 95.5 93 55.9
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 1.9e-17 92.8 93 53.8
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 4.1e-17 91.7 111 45.9
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.6e-16 89.7 93 50.5
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.6e-16 89.7 93 50.5
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 2.1e-16 89.4 105 51.4
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 1.0e-15 87.0 79 57.0
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 1.3e-15 86.7 68 64.7
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 1.7e-15 86.3 123 44.7
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 2.3e-15 85.9 105 50.5
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 3.0e-15 85.5 59 72.9
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 3.0e-15 85.5 71 60.6
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 3.9e-15 85.1 63 65.1
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 6.6e-15 84.3 112 43.8
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 8.6e-15 84.0 112 45.5
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.1e-14 83.6 110 44.5
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 1.5e-14 83.2 107 44.9
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 1.5e-14 83.2 120 40.8
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 1.9e-14 82.8 133 42.1
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.9e-14 82.8 60 63.3
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 4.3e-14 81.6 69 58.0
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 5.6e-14 81.3 116 44.8
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 9.5e-14 80.5 80 52.5
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 1.2e-13 80.1 68 57.4
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.2e-13 80.1 116 44.8
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.2e-13 80.1 69 52.2
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 1.6e-13 79.7 61 60.7
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 2.8e-13 79.0 98 46.9
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 2.8e-13 79.0 113 38.1
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 3.6e-13 78.6 69 53.6
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 4.7e-13 78.2 101 47.5
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 4.7e-13 78.2 55 65.5
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 6.2e-13 77.8 60 60.0
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 6.2e-13 77.8 60 60.0
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 8.1e-13 77.4 73 57.5
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.1e-12 77.0 65 56.9
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.1e-12 77.0 65 56.9
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.1e-12 77.0 65 56.9
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 1.1e-12 77.0 63 55.6
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 4.0e-12 75.1 47 68.1
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 5.2e-12 74.7 40 80.0
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 5.2e-12 74.7 67 58.2
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 5.2e-12 74.7 60 58.3
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 4.4e-11 71.6 40 77.5
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 4.4e-11 71.6 40 75.0
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 9.9e-11 70.5 80 41.2
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.3e-10 70.1 79 49.4
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.3e-10 70.1 79 49.4
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 2.9e-10 68.9 81 45.7
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.9e-09 66.2 84 36.9
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 6.0e-08 61.2 60 41.7
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 1.0e-07 60.5 87 39.1
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.3e-07 60.1 63 39.7
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.3e-07 60.1 84 38.1
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 1.7e-07 59.7 81 39.5
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 2.3e-07 59.3 88 36.4
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 3.9e-07 58.5 116 31.0
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 3.9e-07 58.5 111 33.3
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 6.6e-07 57.8 93 32.3
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.1e-06 57.0 97 33.0
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.1e-06 57.0 109 34.9
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.1e-06 57.0 69 39.1
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.5e-06 56.6 69 39.1
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.5e-06 56.6 67 38.8
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 1.5e-06 56.6 80 40.0
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 1.9e-06 56.2 130 26.2
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.9e-06 56.2 112 33.9
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.9e-06 56.2 91 37.4
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 4.3e-06 55.1 97 30.9
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 4.3e-06 55.1 97 30.9
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 4.3e-06 55.1 78 34.6
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 5.6e-06 54.7 59 40.7
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 5.6e-06 54.7 96 33.3
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 5.6e-06 54.7 89 34.8
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 7.3e-06 54.3 100 32.0
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 7.3e-06 54.3 94 35.1
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 7.3e-06 54.3 98 34.7
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 9.5e-06 53.9 84 33.3
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 9.5e-06 53.9 96 35.4


User provided reference genes

Program Settings