Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold319G48528 Striga asiatica HOM05D011754 ORTHO05D014689 4.7e-237 824.3 468 100.0
SGA_v2.0_scaffold101G29754 Striga asiatica HOM05D011754 ORTHO05D014689 2.8e-197 692.2 469 86.4
SGA_v2.0_scaffold136G35042 Striga asiatica HOM05D011754 ORTHO05D014689 6.2e-72 275.8 363 44.1
SGA_v2.0_scaffold185G40046 Striga asiatica HOM05D011754 ORTHO05D014689 1.2e-43 181.8 440 31.1
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 1.3e-32 145.2 125 55.2
SGA_v2.0_scaffold67G22781 Striga asiatica HOM05D011754 ORTHO05D014689 1.3e-32 145.2 201 48.3
SGA_v2.0_scaffold281G46892 Striga asiatica HOM05D011754 ORTHO05D014689 1.6e-32 144.8 106 62.3
SGA_v2.0_scaffold28G11887 Striga asiatica HOM05D002441 ORTHO05D000174 4.1e-31 140.2 421 25.9
SGA_v2.0_scaffold216G42390 Striga asiatica HOM05D011754 ORTHO05D014689 9.0e-31 139.0 455 33.0
SGA_v2.0_scaffold154G37187 Striga asiatica HOM05D011754 ORTHO05D014689 3.5e-27 127.1 145 51.0
SGA_v2.0_scaffold23G10167 Striga asiatica HOM05D011754 ORTHO05D014689 1.6e-24 118.2 102 53.9
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 1.4e-23 115.2 372 23.7
SGA_v2.0_scaffold136G35040 Striga asiatica HOM05D011754 ORTHO05D014689 1.8e-23 114.8 127 47.2
SGA_v2.0_scaffold9G04715 Striga asiatica HOM05D008036 ORTHO05D000174 1.2e-22 112.1 179 33.0
Medtr7g451880 Medicago truncatula HOM05D008036 ORTHO05D000174 1.9e-20 104.8 230 30.4
arahy.Tifrunner.gnm1.ann1.9DML6S Arachis hypogaea HOM05D002441 ORTHO05D002376 7.2e-20 102.8 442 23.3
SGA_v2.0_scaffold237G43840 Striga asiatica HOM05D010852 ORTHO05D002376 7.2e-20 102.8 413 21.5
Medtr4g058660 Medicago truncatula HOM05D008036 ORTHO05D000174 3.6e-19 100.5 230 30.0
Medtr2g005490 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
Medtr2g010570 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
Medtr3g031190 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
Medtr5g056290 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
Medtr5g081190 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
Medtr5g091480 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
Medtr6g087820 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
Medtr7g024060 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
Medtr8g446640 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-18 99.0 230 30.0
SGA_v2.0_scaffold403G51004 Striga asiatica HOM05D011754 ORTHO05D014689 1.8e-18 98.2 64 70.3
Medtr2g007410 Medicago truncatula HOM05D008036 ORTHO05D000174 3.0e-18 97.4 230 29.6
Medtr5g030110 Medicago truncatula HOM05D008036 ORTHO05D000174 3.0e-18 97.4 230 29.6
arahy.Tifrunner.gnm1.ann1.BDM5B3 Arachis hypogaea HOM05D002441 ORTHO05D002376 5.1e-18 96.7 436 21.6
Medtr1g023370 Medicago truncatula HOM05D008036 ORTHO05D000174 5.1e-18 96.7 214 29.9
Medtr2g010270 Medicago truncatula HOM05D008036 ORTHO05D000174 5.1e-18 96.7 237 28.3
Medtr7g074180 Medicago truncatula HOM05D008036 ORTHO05D000174 5.1e-18 96.7 224 27.2
arahy.Tifrunner.gnm1.ann1.DBF1B4 Arachis hypogaea HOM05D002441 ORTHO05D002376 8.8e-18 95.9 437 21.5
SGA_v2.0_scaffold69G23109 Striga asiatica HOM05D011787 ORTHO05D008317 2.0e-17 94.7 154 28.6
SGA_v2.0_scaffold250G44995 Striga asiatica HOM05D010852 ORTHO05D002376 4.3e-17 93.6 411 20.2
SGA_v2.0_scaffold30G12418 Striga asiatica HOM05D011787 ORTHO05D008317 4.3e-17 93.6 153 28.8
ECA232G2690 Erigeron canadensis HOM05D000353 ORTHO05D000174 7.4e-17 92.8 237 26.6
SGA_v2.0_scaffold234G43658 Striga asiatica HOM05D011754 ORTHO05D014689 2.2e-16 91.3 45 93.3
Medtr1g011490 Medicago truncatula HOM05D008036 ORTHO05D000174 1.4e-15 88.6 230 28.3
SGA_v2.0_scaffold57G20223 Striga asiatica HOM05D011754 ORTHO05D014689 2.4e-15 87.8 95 49.5
SGA_v2.0_scaffold59G20735 Striga asiatica HOM05D010852 ORTHO05D002376 3.1e-15 87.4 396 21.7
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 4.1e-15 87.0 274 24.5
Medtr3g015660 Medicago truncatula HOM05D008036 ORTHO05D000174 5.3e-15 86.7 208 27.9
Lj3g0013474 Lotus japonicus HOM05D000353 ORTHO05D000174 9.1e-15 85.9 315 26.7
Medtr1g082860 Medicago truncatula HOM05D008036 ORTHO05D000174 1.2e-14 85.5 201 28.9
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 1.5e-14 85.1 391 20.5
Medtr5g045850 Medicago truncatula HOM05D008036 ORTHO05D000174 2.2e-13 81.3 190 29.5
arahy.Tifrunner.gnm1.ann1.U0JAJ0 Arachis hypogaea HOM05D002441 ORTHO05D002376 2.9e-13 80.9 371 21.8
SGA_v2.0_scaffold167G38409 Striga asiatica HOM05D010852 ORTHO05D002376 2.9e-13 80.9 199 24.6
ECA236G5002 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.8e-13 80.5 225 25.8
Medtr5g019960 Medicago truncatula HOM05D008036 ORTHO05D000174 6.5e-13 79.7 195 27.7
CAN.G220.26 Capsicum annuum HOM05D002891 ORTHO05D002376 3.2e-12 77.4 139 29.5
arahy.Tifrunner.gnm1.ann1.N18BUU Arachis hypogaea HOM05D002441 ORTHO05D008317 5.5e-12 76.6 280 24.6
Medtr8g005940 Medicago truncatula HOM05D008036 ORTHO05D000174 9.4e-12 75.9 230 26.5
HanXRQChr15g0464461 Helianthus annuus HOM05D003964 ORTHO05D000174 1.6e-11 75.1 247 25.1
HanXRQChr12g0359401 Helianthus annuus HOM05D003964 ORTHO05D011997 3.6e-11 73.9 246 25.6
A05p20920 Brassica napus HOM05D000353 ORTHO05D000174 1.0e-10 72.4 262 23.3
BraA05t20997Z Brassica rapa HOM05D000353 ORTHO05D000174 1.0e-10 72.4 261 23.4
Medtr0105s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-10 72.4 208 26.4
TPR.G13367 Trifolium pratense HOM05D008036 ORTHO05D000174 1.0e-10 72.4 182 28.0
HanXRQChr15g0471541 Helianthus annuus HOM05D003964 ORTHO05D000174 3.0e-10 70.9 224 26.8
HanXRQChr14g0428201 Helianthus annuus HOM05D003964 ORTHO05D000174 3.9e-10 70.5 174 28.2
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 5.1e-10 70.1 279 21.9
Carub.0007s3522 Capsella rubella HOM05D000353 ORTHO05D000174 6.7e-10 69.7 202 22.8
HanXRQChr05g0155711 Helianthus annuus HOM05D003964 ORTHO05D000174 6.7e-10 69.7 247 25.5
arahy.Tifrunner.gnm1.ann1.54XB95 Arachis hypogaea HOM05D002441 ORTHO05D002376 8.8e-10 69.3 273 24.5
SGA_v2.0_scaffold29G12331 Striga asiatica HOM05D010852 ORTHO05D002376 8.8e-10 69.3 358 20.9
C08p32530 Brassica napus HOM05D000353 ORTHO05D000174 1.5e-09 68.6 210 21.0
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 1.5e-09 68.6 395 20.3
SGA_v2.0_scaffold241G44194 Striga asiatica HOM05D011787 ORTHO05D008317 1.5e-09 68.6 227 25.6
BcaC05g28066 Brassica carinata HOM05D000353 ORTHO05D000174 2.0e-09 68.2 210 22.9
C01p31900 Brassica napus HOM05D000353 ORTHO05D000174 2.0e-09 68.2 210 21.0
C05p40800 Brassica napus HOM05D000353 ORTHO05D000174 2.0e-09 68.2 210 22.9
Nitab4.5_0006891g0010 Nicotiana tabacum HOM05D002441 ORTHO05D008317 3.3e-09 67.4 199 23.6
HanXRQChr05g0150161 Helianthus annuus HOM05D003964 ORTHO05D011997 4.4e-09 67.0 247 23.9
Medtr6g465570 Medicago truncatula HOM05D008036 ORTHO05D008317 4.4e-09 67.0 128 28.9
HanXRQChr05g0160951 Helianthus annuus HOM05D003964 ORTHO05D000174 5.7e-09 66.6 207 26.1
BcaB06g28316 Brassica carinata HOM05D000353 ORTHO05D000174 9.7e-09 65.9 225 22.2
BolC9t53770H Brassica oleracea HOM05D000353 ORTHO05D000174 1.3e-08 65.5 174 21.3
Nitab4.5_0000939g0010 Nicotiana tabacum HOM05D002441 ORTHO05D008317 1.3e-08 65.5 130 25.4
HanXRQChr05g0145471 Helianthus annuus HOM05D003964 ORTHO05D000174 2.2e-08 64.7 229 24.9
SGA_v2.0_scaffold335G49121 Striga asiatica HOM05D011787 ORTHO05D008317 2.2e-08 64.7 143 25.9
Medtr5g012180 Medicago truncatula HOM05D008036 ORTHO05D000174 2.8e-08 64.3 127 31.5
Medtr6g073570 Medicago truncatula HOM05D008036 ORTHO05D000174 2.8e-08 64.3 232 20.3
Medtr7g045450 Medicago truncatula HOM05D008036 ORTHO05D000174 2.8e-08 64.3 232 20.3
BcaB05g22568 Brassica carinata HOM05D000353 ORTHO05D000174 4.8e-08 63.5 214 22.9
Nitab4.5_0000020g0400 Nicotiana tabacum HOM05D002441 ORTHO05D002376 4.8e-08 63.5 137 24.8
Medtr6g024030 Medicago truncatula HOM05D008036 ORTHO05D000174 6.3e-08 63.2 103 34.0
C07p41190 Brassica napus HOM05D000353 ORTHO05D000174 8.2e-08 62.8 198 22.2
BolC4t25735H Brassica oleracea HOM05D000353 ORTHO05D000174 8.2e-08 62.8 174 20.7
HanXRQChr05g0146511 Helianthus annuus HOM05D003964 ORTHO05D000174 1.1e-07 62.4 169 24.3
BraA09t40707Z Brassica rapa HOM05D000353 ORTHO05D000174 1.4e-07 62.0 316 19.6
SGA_v2.0_scaffold15G07417 Striga asiatica HOM05D002441 ORTHO05D000174 2.4e-07 61.2 91 37.4
Carub.0001s3741 Capsella rubella HOM05D000353 ORTHO05D000174 3.1e-07 60.8 265 19.6
Medtr0048s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 4.1e-07 60.5 105 32.4
SGA_v2.0_scaffold29G12295 Striga asiatica HOM05D002090 ORTHO05D001923 4.1e-07 60.5 196 22.4
Aqoxy4G03175 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 5.3e-07 60.1 231 23.8
Aqoxy5G04189 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 5.3e-07 60.1 231 23.8
Phvul.006G016100 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 5.3e-07 60.1 199 24.1
Aqoxy4G01383 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 7.0e-07 59.7 231 23.8
SGA_v2.0_scaffold272G46356 Striga asiatica HOM05D011754 ORTHO05D014689 9.1e-07 59.3 61 50.8
HanXRQChr06g0179661 Helianthus annuus HOM05D003964 ORTHO05D000174 1.2e-06 58.9 204 25.5
BcaC05g29407 Brassica carinata HOM05D000353 ORTHO05D000174 1.6e-06 58.5 118 26.3
C07p13750 Brassica napus HOM05D000353 ORTHO05D000174 2.0e-06 58.2 225 20.0
HanXRQChr13g0403861 Helianthus annuus HOM05D003964 ORTHO05D000174 2.0e-06 58.2 232 24.1
BcaC08g44937 Brassica carinata HOM05D000353 ORTHO05D000174 5.9e-06 56.6 190 21.6
BraA09t37737Z Brassica rapa HOM05D000313 ORTHO05D000065 5.9e-06 56.6 153 22.2
HanXRQChr06g0179651 Helianthus annuus HOM05D003964 ORTHO05D000174 5.9e-06 56.6 204 25.0
HanXRQChr08g0230241 Helianthus annuus HOM05D003964 ORTHO05D000174 5.9e-06 56.6 204 25.0
C09p29310 Brassica napus HOM05D000353 ORTHO05D000174 7.7e-06 56.2 174 22.4


User provided reference genes

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