Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 6.4e-77 290.8 147 100.0
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 9.9e-70 266.9 146 93.2
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 2.5e-49 199.1 114 93.0
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 8.1e-48 194.1 146 67.8
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 1.1e-44 183.7 111 88.3
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 4.2e-44 181.8 146 65.1
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 7.1e-44 181.0 134 70.1
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 7.1e-44 181.0 138 68.1
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 9.3e-44 180.6 146 67.8
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 9.3e-44 180.6 146 67.8
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 1.6e-43 179.9 136 69.9
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 1.0e-42 177.2 145 66.9
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.0e-42 177.2 137 71.5
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 1.0e-42 177.2 143 67.1
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.0e-42 177.2 132 72.0
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 2.3e-42 176.0 134 69.4
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 3.0e-42 175.6 146 64.4
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 3.9e-42 175.3 145 64.8
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 3.9e-42 175.3 133 67.7
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 6.7e-42 174.5 147 65.3
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 8.7e-42 174.1 139 68.3
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 8.7e-42 174.1 139 68.3
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.1e-41 173.7 134 69.4
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.1e-41 173.7 145 64.1
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.5e-41 173.3 135 68.9
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 2.5e-41 172.6 135 67.4
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 3.3e-41 172.2 134 76.1
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 7.4e-41 171.0 139 66.9
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 7.4e-41 171.0 134 65.7
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 1.3e-40 170.2 136 68.4
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 1.3e-40 170.2 136 68.4
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 4.8e-40 168.3 117 77.8
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 6.2e-40 167.9 133 66.9
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 8.2e-40 167.5 141 65.2
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.4e-39 166.8 135 63.0
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.4e-39 166.8 133 66.9
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.8e-39 166.4 129 67.4
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 1.8e-39 166.4 139 63.3
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.8e-39 166.4 134 64.2
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 2.4e-39 166.0 144 63.2
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 2.4e-39 166.0 132 65.9
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 3.1e-39 165.6 133 65.4
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.1e-39 165.6 134 62.7
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 3.1e-39 165.6 150 61.3
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 5.3e-39 164.9 134 63.4
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 5.3e-39 164.9 132 65.9
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 6.9e-39 164.5 134 63.4
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 1.5e-38 163.3 134 62.7
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 1.5e-38 163.3 133 65.4
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 2.0e-38 162.9 133 67.7
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 5.8e-38 161.4 129 66.7
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 5.8e-38 161.4 134 62.7
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 7.6e-38 161.0 134 62.7
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 1.3e-37 160.2 147 57.8
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 2.9e-37 159.1 134 61.9
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 3.8e-37 158.7 134 61.9
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 3.8e-37 158.7 133 66.2
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 4.9e-37 158.3 127 65.4
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 6.5e-37 157.9 133 62.4
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 8.4e-37 157.5 146 61.0
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.4e-36 156.8 133 62.4
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 1.4e-36 156.8 133 62.4
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.4e-36 156.8 135 62.2
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.4e-36 156.8 129 67.4
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 5.5e-36 154.8 136 63.2
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 7.1e-36 154.5 128 62.5
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 7.1e-36 154.5 128 62.5
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 7.1e-36 154.5 128 62.5
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 7.1e-36 154.5 128 62.5
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 7.1e-36 154.5 128 62.5
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 9.3e-36 154.1 135 63.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 2.1e-35 152.9 148 58.1
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 2.1e-35 152.9 134 61.2
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 3.5e-35 152.1 146 58.9
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 4.6e-35 151.8 167 52.7
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 4.6e-35 151.8 133 63.9
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 6.0e-35 151.4 135 63.7
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.0e-35 151.4 135 64.4
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 7.9e-35 151.0 147 58.5
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.8e-34 149.8 146 58.2
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 2.3e-34 149.4 125 64.8
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 3.9e-34 148.7 133 60.2
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 3.9e-34 148.7 135 61.5
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 3.9e-34 148.7 134 59.7
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 1.5e-33 146.7 147 57.1
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.9e-33 146.4 136 61.8
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 3.3e-33 145.6 147 53.7
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.3e-33 145.2 149 55.7
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 4.3e-33 145.2 134 62.7
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.6e-32 143.3 136 59.6
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.6e-32 143.3 136 59.6
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 2.2e-32 142.9 134 59.7
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.8e-32 142.5 134 60.4
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 6.3e-32 141.4 146 56.2
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 8.2e-32 141.0 129 59.7
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 1.1e-31 140.6 113 63.7
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.4e-31 140.2 126 59.5
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 1.8e-31 139.8 126 58.7
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 4.1e-31 138.7 129 59.7
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 4.1e-31 138.7 133 57.9
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 5.3e-31 138.3 135 54.8
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 6.9e-31 137.9 127 62.2
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 9.0e-31 137.5 129 58.9
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 2.0e-30 136.3 135 55.6
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 3.4e-30 135.6 135 54.1
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 4.5e-30 135.2 133 57.1
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 2.2e-29 132.9 134 57.5
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 4.6e-27 125.2 123 56.1
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 5.1e-26 121.7 199 42.7
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 3.3e-25 119.0 123 51.2
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 7.4e-25 117.9 110 59.1
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 9.7e-25 117.5 59 94.9
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 1.7e-24 116.7 112 57.1
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.7e-21 106.7 79 68.4
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 5.5e-20 101.7 70 70.0
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.0e-18 97.4 63 73.0
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.4e-18 97.1 110 49.1
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 9.7e-17 90.9 60 73.3
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.7e-16 90.1 63 69.8
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.8e-16 89.4 88 58.0
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 4.8e-16 88.6 53 79.2
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 1.8e-15 86.7 97 48.5
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 2.4e-15 86.3 102 52.9
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 4.1e-15 85.5 85 56.5
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 4.1e-15 85.5 85 56.5
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.0e-14 83.2 52 76.9
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.6e-14 82.8 84 61.9
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.4e-12 77.0 52 69.2
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.2e-12 75.9 50 74.0


User provided reference genes

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