Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 8.6e-108 393.7 199 100.0
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 2.0e-56 223.0 135 86.7
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 6.5e-55 218.0 135 83.7
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 6.5e-55 218.0 113 98.2
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 2.6e-51 206.1 187 59.9
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 9.7e-51 204.1 173 63.6
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 9.7e-51 204.1 173 63.6
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 3.7e-50 202.2 173 63.6
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 6.3e-50 201.4 114 93.0
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.6e-48 196.8 176 60.8
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 3.5e-48 195.7 176 60.2
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.3e-47 193.7 169 60.9
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 1.3e-47 193.7 173 61.3
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 6.5e-47 191.4 173 60.7
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.1e-46 190.7 168 61.9
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.2e-46 189.1 169 60.9
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 7.2e-46 188.0 182 56.6
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 3.6e-45 185.7 173 58.4
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 3.6e-45 185.7 173 58.4
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 6.1e-45 184.9 172 58.7
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 8.0e-45 184.5 166 62.0
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 8.0e-45 184.5 173 57.8
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.4e-44 183.7 174 58.6
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 3.0e-44 182.6 169 58.6
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 6.7e-44 181.4 182 54.9
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 6.7e-44 181.4 180 55.0
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 6.7e-44 181.4 168 57.1
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 8.8e-44 181.0 183 56.8
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 8.8e-44 181.0 169 56.8
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 8.8e-44 181.0 169 56.8
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 8.8e-44 181.0 166 59.6
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 8.8e-44 181.0 180 53.9
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.2e-43 180.6 177 56.5
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.2e-43 180.6 172 58.7
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.5e-43 180.3 178 55.1
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 2.0e-43 179.9 173 57.2
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 2.6e-43 179.5 174 58.6
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 5.7e-43 178.3 172 58.1
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 5.7e-43 178.3 169 56.2
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 5.7e-43 178.3 121 82.6
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 9.7e-43 177.6 173 54.3
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 1.3e-42 177.2 172 56.4
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 1.3e-42 177.2 177 55.4
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.7e-42 176.8 184 54.3
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 2.2e-42 176.4 166 56.6
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 2.2e-42 176.4 179 53.6
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 2.2e-42 176.4 173 55.5
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 2.8e-42 176.0 173 54.9
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 2.8e-42 176.0 170 55.3
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 2.8e-42 176.0 172 55.8
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 4.8e-42 175.3 173 54.3
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 4.8e-42 175.3 169 55.6
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.3e-42 174.9 182 56.0
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 6.3e-42 174.9 173 53.8
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 8.2e-42 174.5 173 53.8
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 8.2e-42 174.5 173 57.2
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 1.1e-41 174.1 173 56.1
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.1e-41 174.1 167 55.7
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.8e-41 173.3 184 53.8
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 3.1e-41 172.6 172 54.7
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 3.1e-41 172.6 172 54.7
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 4.1e-41 172.2 184 52.2
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 7.0e-41 171.4 172 52.3
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 7.0e-41 171.4 172 52.3
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 7.0e-41 171.4 172 52.3
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 7.0e-41 171.4 172 52.3
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 7.0e-41 171.4 172 52.3
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 7.0e-41 171.4 173 53.2
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 7.0e-41 171.4 184 53.3
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.2e-40 170.6 170 54.7
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.6e-40 170.2 172 54.7
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 2.0e-40 169.9 180 52.8
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 2.0e-40 169.9 174 54.6
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 3.5e-40 169.1 174 54.6
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 5.9e-40 168.3 173 52.6
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 5.9e-40 168.3 186 50.5
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 7.7e-40 167.9 182 51.1
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 7.7e-40 167.9 172 55.2
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 1.0e-39 167.5 114 75.4
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 1.0e-39 167.5 171 54.4
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.3e-39 167.2 186 50.5
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.3e-39 167.2 186 50.5
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 2.2e-39 166.4 184 50.5
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 2.9e-39 166.0 171 55.6
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 8.5e-39 164.5 124 67.7
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 8.5e-39 164.5 169 53.8
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 2.5e-38 162.9 211 45.5
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 3.2e-38 162.5 171 52.6
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 9.4e-38 161.0 179 51.4
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.7e-37 159.5 188 50.5
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 2.7e-37 159.5 174 50.0
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 3.6e-37 159.1 123 65.9
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 4.7e-37 158.7 171 51.5
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 8.0e-37 157.9 155 56.8
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.0e-36 157.5 186 50.5
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 1.0e-36 157.5 173 51.4
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 1.8e-36 156.8 171 53.2
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 3.0e-36 156.0 138 59.4
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 6.8e-36 154.8 175 49.1
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 6.8e-36 154.8 123 63.4
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 8.8e-36 154.5 175 48.6
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 1.5e-35 153.7 124 66.9
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 4.4e-35 152.1 175 50.9
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 9.8e-35 151.0 176 50.0
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 2.2e-34 149.8 236 42.4
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 2.8e-34 149.4 184 47.8
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 6.3e-34 148.3 173 46.8
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 1.1e-33 147.5 132 59.1
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 3.1e-33 146.0 172 47.1
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 9.1e-33 144.4 137 56.2
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 5.9e-32 141.7 168 48.8
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 2.2e-31 139.8 112 67.9
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 1.2e-29 134.0 166 47.6
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 5.2e-28 128.6 127 56.7
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 2.7e-24 116.3 161 42.2
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 7.8e-24 114.8 114 54.4
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.0e-23 114.4 57 96.5
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.7e-23 113.6 120 51.7
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 5.6e-22 108.6 106 55.7
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 3.4e-19 99.4 63 74.6
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 5.7e-19 98.6 77 63.6
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 5.7e-19 98.6 150 38.7
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 1.3e-15 87.4 52 80.8
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 6.6e-15 85.1 91 53.8
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 4.7e-13 79.0 53 69.8
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 4.7e-13 79.0 62 62.9
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 4.7e-13 79.0 62 62.9
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.1e-12 77.8 50 76.0
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.8e-12 77.0 64 67.2
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 1.6e-08 63.9 114 33.3


User provided reference genes

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