Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold315G48368 Striga asiatica HOM05D032627 ORTHO05D051391 9.9e-65 250.0 128 100.0
SGA_v2.0_scaffold315G48373 Striga asiatica HOM05D032627 ORTHO05D051391 6.2e-51 204.1 121 85.1
FAN22G2204 Fragaria x ananassa HOM05D001377 ORTHO05D001221 5.7e-20 101.3 134 45.5
SGA_v2.0_scaffold315G48372 Striga asiatica HOM05D032627 ORTHO05D001221 7.7e-17 90.9 50 90.0
SGA_v2.0_scaffold36G14511 Striga asiatica HOM05D001377 ORTHO05D001221 3.2e-15 85.5 78 61.5
MSTRG.810 Avicennia marina HOM05D001377 ORTHO05D001221 2.3e-13 79.3 71 59.2
SalBow8G4999 Salvia bowleyana HOM05D001377 ORTHO05D001221 3.4e-12 75.5 69 62.3
Hma1.2p1_0605F.1_g187860 Hydrangea macrophylla HOM05D001377 ORTHO05D001221 1.1e-10 70.5 71 52.1
Oeu041875.1 Olea europaea HOM05D001377 ORTHO05D001221 7.0e-10 67.8 76 47.4
TWI79G1631 Tripterygium wilfordii HOM05D001377 ORTHO05D001221 1.2e-09 67.0 75 48.0
Dinv05807 Davidia involucrata HOM05D001377 ORTHO05D001221 2.0e-09 66.2 71 49.3
GSVIVG01011972001 Vitis vinifera HOM05D001377 ORTHO05D001221 2.7e-09 65.9 71 49.3
Ah.03g138000 Amaranthus hybridus HOM05D001377 ORTHO05D001221 4.5e-09 65.1 119 33.6
QL01p000954 Quercus lobata HOM05D001377 ORTHO05D001221 4.5e-09 65.1 69 47.8
Actinidia16605 Actinidia chinensis HOM05D001377 ORTHO05D001221 5.9e-09 64.7 72 47.2
Migut.L01107 Erythranthe guttata HOM05D001377 ORTHO05D001221 5.9e-09 64.7 71 52.1
HanXRQChr16g0528821 Helianthus annuus HOM05D001377 ORTHO05D001221 5.9e-09 64.7 74 41.9
CSS0008376 Camellia sinensis var. sinensis HOM05D001377 ORTHO05D001221 7.7e-09 64.3 70 48.6
CiPaw.15G002200 Carya illinoinensis HOM05D001377 ORTHO05D001221 7.7e-09 64.3 73 41.1
Manes.06G074000 Manihot esculenta HOM05D001377 ORTHO05D001221 7.7e-09 64.3 78 46.2
Peaxi162Scf00004g10118 Petunia axillaris HOM05D001377 ORTHO05D001221 7.7e-09 64.3 70 47.1
Lj6C767T7 Lonicera japonica HOM05D001377 ORTHO05D001221 1.0e-08 63.9 76 44.7
TWI31G1272 Tripterygium wilfordii HOM05D001377 ORTHO05D001221 1.0e-08 63.9 40 70.0
Dinv16523 Davidia involucrata HOM05D001377 ORTHO05D001221 1.3e-08 63.5 71 47.9
Potri.008G114800 Populus trichocarpa HOM05D001377 ORTHO05D001221 1.3e-08 63.5 71 52.1
Cc11_g10760 Coffea canephora HOM05D001377 ORTHO05D001221 2.2e-08 62.8 40 70.0
AUR62007744 Chenopodium quinoa HOM05D001377 ORTHO05D001221 2.9e-08 62.4 105 40.0
MD16G1049800 Malus domestica HOM05D001377 ORTHO05D001221 2.9e-08 62.4 74 43.2
FAN17G1780 Fragaria x ananassa HOM05D001377 ORTHO05D001221 3.8e-08 62.0 74 44.6
Prupe.1G303700 Prunus persica HOM05D001377 ORTHO05D001221 3.8e-08 62.0 73 42.5
Sabra08G0087000 Salix brachista HOM05D001377 ORTHO05D001221 3.8e-08 62.0 71 50.7
Gorai.008G187500 Gossypium raimondii HOM05D001377 ORTHO05D001221 5.0e-08 61.6 40 70.0
FAN07G2260 Fragaria x ananassa HOM05D001377 ORTHO05D001221 6.5e-08 61.2 75 42.7
MD13G1048500 Malus domestica HOM05D001377 ORTHO05D001221 6.5e-08 61.2 74 41.9
THA.LOC104825719 Tarenaya hassleriana HOM05D001377 ORTHO05D001221 6.5e-08 61.2 45 60.0
Aa31LG1G1390 Aethionema arabicum HOM05D001377 ORTHO05D001221 8.5e-08 60.8 39 69.2
MELO3C005352.2 Cucumis melo HOM05D001377 ORTHO05D001221 8.5e-08 60.8 75 42.7
Gohir.D12G174900 Gossypium hirsutum HOM05D001377 ORTHO05D001221 1.5e-07 60.1 38 71.1
Hund05774 Selenicereus undatus HOM05D001377 ORTHO05D001221 1.5e-07 60.1 40 65.0
CDE06G2305 Ceratophyllum demersum HOM05D001377 ORTHO05D001221 1.9e-07 59.7 41 68.3
FAN12G3823 Fragaria x ananassa HOM05D001377 ORTHO05D001221 1.9e-07 59.7 75 42.7
CANSAT11G1821 Cannabis sativa HOM05D001377 ORTHO05D001221 2.5e-07 59.3 72 43.1
Duzib251G0529 Durio zibethinus HOM05D001377 ORTHO05D001221 2.5e-07 59.3 40 67.5
RcHm_v2.0_Chr7g0226101 Rosa chinensis HOM05D001377 ORTHO05D001221 2.5e-07 59.3 74 45.9
ECA234G0497 Erigeron canadensis HOM05D001377 ORTHO05D001221 3.2e-07 58.9 73 41.1
A06p08530 Brassica napus HOM05D001377 ORTHO05D001221 4.2e-07 58.5 39 66.7
C05p10130 Brassica napus HOM05D001377 ORTHO05D001221 4.2e-07 58.5 39 66.7
BraA06t24048Z Brassica rapa HOM05D001377 ORTHO05D001221 4.2e-07 58.5 39 66.7
AUR62002935 Chenopodium quinoa HOM05D001377 ORTHO05D001221 4.2e-07 58.5 105 39.0
Ciclev10030538m.g Citrus clementina HOM05D001377 ORTHO05D001221 4.2e-07 58.5 38 65.8
DCAR_030093 Daucus carota HOM05D001377 ORTHO05D001221 4.2e-07 58.5 38 68.4
Thhalv10006601m.g Eutrema salsugineum HOM05D001377 ORTHO05D001221 4.2e-07 58.5 39 66.7
Gohir.A12G172400 Gossypium hirsutum HOM05D001377 ORTHO05D001221 4.2e-07 58.5 38 71.1
Sc11g0002990 Simmondsia chinensis HOM05D001377 ORTHO05D001221 4.2e-07 58.5 67 49.3
Thecc.02G363000 Theobroma cacao HOM05D001377 ORTHO05D001221 4.2e-07 58.5 39 66.7
Cfa018650 Carpinus fangiana HOM05D001377 ORTHO05D001221 5.5e-07 58.2 40 57.5
CDE07G1053 Ceratophyllum demersum HOM05D001377 ORTHO05D001221 5.5e-07 58.2 41 65.9
Carub.0001s1295 Capsella rubella HOM05D001377 ORTHO05D001221 7.2e-07 57.8 39 66.7
CsaV3_5G028920 Cucumis sativus L. HOM05D001377 ORTHO05D001221 7.2e-07 57.8 91 36.3
BolC5t29759H Brassica oleracea HOM05D001377 ORTHO05D001221 9.4e-07 57.4 39 64.1
Psat1g067200 Pisum sativum HOM05D001377 ORTHO05D001221 9.4e-07 57.4 38 63.2
Sp1g11740 Schrenkiella parvula HOM05D001377 ORTHO05D001221 9.4e-07 57.4 39 64.1
Ca_04307_v3 Cicer arietinum L. HOM05D001377 ORTHO05D001221 1.2e-06 57.0 38 63.2
Lj2g0006914 Lotus japonicus HOM05D001377 ORTHO05D001221 1.2e-06 57.0 40 60.0
PGR119G1444 Punica granatum HOM05D001377 ORTHO05D001221 1.2e-06 57.0 37 64.9
VMungo1215G1277 Vigna mungo HOM05D001377 ORTHO05D001221 1.2e-06 57.0 40 62.5
Lsat_1_v5_gn_4_19300 Lactuca sativa HOM05D001377 ORTHO05D001221 1.6e-06 56.6 40 60.0
Lalb_Chr04g0255011 Lupinus albus HOM05D001377 ORTHO05D001221 1.6e-06 56.6 40 57.5
Medtr6g015285 Medicago truncatula HOM05D001377 ORTHO05D001221 2.1e-06 56.2 58 48.3
TPR.G10013 Trifolium pratense HOM05D001377 ORTHO05D001221 2.1e-06 56.2 39 61.5
CARHR013600 Cardamine hirsuta HOM05D001377 ORTHO05D001221 2.7e-06 55.8 39 64.1
Aa31sc79G80 Aethionema arabicum HOM05D001377 ORTHO05D001221 3.6e-06 55.5 37 67.6
Eucgr.G02361 Eucalyptus grandis HOM05D001377 ORTHO05D001221 3.6e-06 55.5 40 57.5
Nn4g23682 Nelumbo nucifera HOM05D001377 ORTHO05D001221 3.6e-06 55.5 39 64.1
Phvul.003G025500 Phaseolus vulgaris HOM05D001377 ORTHO05D001221 3.6e-06 55.5 40 60.0
A02p15350 Brassica napus HOM05D001377 ORTHO05D001221 4.7e-06 55.1 65 49.2
BraA02t06595Z Brassica rapa HOM05D001377 ORTHO05D001221 4.7e-06 55.1 65 49.2
Haze_17417 Corylus avellana HOM05D001377 ORTHO05D001221 4.7e-06 55.1 129 28.7
TAR622G0904 Trochodendron aralioides HOM05D001377 ORTHO05D001221 4.7e-06 55.1 37 67.6
AL1G24910 Arabidopsis lyrata HOM05D001377 ORTHO05D001221 6.1e-06 54.7 39 59.0
EL10Ac6g14522 Beta vulgaris HOM05D001377 ORTHO05D001221 6.1e-06 54.7 92 35.9
CARHR061610 Cardamine hirsuta HOM05D001377 ORTHO05D001221 6.1e-06 54.7 67 47.8
ClCG01G005770 Citrullus lanatus HOM05D001377 ORTHO05D001221 6.1e-06 54.7 38 63.2


User provided reference genes

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