Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 5.6e-167 590.9 301 100.0
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 2.6e-116 422.5 296 71.3
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 5.9e-116 421.4 299 70.2
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.7e-86 323.6 268 61.6
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.7e-86 323.6 269 61.7
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.3e-85 318.5 284 58.5
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 3.5e-84 315.8 291 57.7
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.0e-83 314.3 284 58.8
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.0e-83 314.3 271 60.5
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.3e-83 313.9 288 58.3
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 2.2e-83 313.2 288 56.6
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 6.5e-83 311.6 293 55.6
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.5e-82 310.5 274 58.8
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 1.9e-82 310.1 289 58.1
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 3.2e-82 309.3 260 61.5
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 7.2e-82 308.1 292 55.5
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.6e-81 307.0 288 56.2
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.7e-81 306.2 287 57.1
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 2.7e-81 306.2 288 57.3
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 3.6e-81 305.8 283 55.8
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 4.7e-81 305.4 288 55.6
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 6.1e-81 305.1 283 55.8
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 8.0e-81 304.7 289 55.7
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 8.0e-81 304.7 289 55.7
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.8e-80 303.5 288 55.6
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 3.0e-80 302.8 285 56.5
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 6.8e-80 301.6 263 58.2
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 8.8e-80 301.2 296 56.8
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 1.5e-79 300.4 291 57.7
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 3.4e-79 299.3 296 56.1
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.7e-78 297.0 294 55.1
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 4.8e-78 295.4 255 58.4
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 6.3e-78 295.0 273 54.6
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.4e-77 293.9 289 54.0
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 4.1e-77 292.4 292 52.4
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 4.1e-77 292.4 286 54.5
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.0e-76 290.0 286 54.9
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 3.5e-76 289.3 274 54.7
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.7e-75 287.0 285 53.3
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 2.3e-75 286.6 285 52.6
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 3.8e-75 285.8 270 54.8
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.8e-75 285.8 285 54.4
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.5e-74 283.1 284 53.2
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 2.5e-74 283.1 273 54.6
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 3.3e-74 282.7 271 56.1
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 4.2e-74 282.3 295 53.6
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 4.2e-74 282.3 262 56.5
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 7.2e-74 281.6 274 54.7
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.6e-73 280.4 274 53.3
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 2.1e-73 280.0 290 50.7
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 3.6e-73 279.3 271 54.2
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 4.7e-73 278.9 271 56.1
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 4.7e-73 278.9 288 51.4
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.4e-72 277.3 292 51.0
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 3.0e-72 276.2 269 54.3
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 4.0e-72 275.8 295 51.2
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 5.2e-72 275.4 274 52.2
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 5.2e-72 275.4 268 53.0
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 8.9e-72 274.6 273 53.5
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 8.9e-72 274.6 273 53.8
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 3.4e-71 272.7 270 56.7
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 3.4e-71 272.7 273 52.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 4.4e-71 272.3 284 52.8
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 5.7e-71 271.9 273 51.6
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 9.8e-71 271.2 293 50.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.3e-70 270.8 281 50.9
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.7e-70 270.4 294 49.7
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 4.9e-70 268.9 355 47.6
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.4e-69 267.3 270 51.9
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 7.0e-69 265.0 295 50.2
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 9.2e-69 264.6 299 50.2
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 9.2e-69 264.6 270 51.9
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 1.6e-68 263.8 295 48.8
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.0e-68 263.5 297 50.2
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 2.7e-68 263.1 297 49.8
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 4.5e-68 262.3 253 55.7
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 5.9e-68 261.9 289 49.5
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 8.6e-67 258.1 263 52.9
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.6e-66 255.4 252 54.8
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 7.3e-66 255.0 288 48.3
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 4.7e-65 252.3 254 53.5
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 5.2e-64 248.8 220 58.6
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 6.8e-64 248.4 264 51.1
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 6.8e-64 248.4 262 49.2
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 7.5e-63 245.0 282 49.3
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.3e-62 244.2 273 47.6
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.3e-62 244.2 280 48.6
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 2.2e-62 243.4 316 45.3
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 2.9e-62 243.0 295 46.4
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 1.9e-61 240.4 293 44.4
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.3e-59 234.2 283 47.3
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 3.0e-59 233.0 274 47.8
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 3.0e-59 233.0 291 44.7
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 3.9e-59 232.6 283 46.6
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 8.6e-59 231.5 292 42.5
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 4.3e-58 229.2 223 52.5
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.2e-57 227.6 262 46.6
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 7.5e-55 218.4 272 43.0
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 9.8e-55 218.0 285 44.9
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 4.9e-54 215.7 262 44.7
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 1.3e-51 207.6 259 44.4
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 4.0e-48 196.1 244 44.7
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 6.4e-46 188.7 187 55.6
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 8.3e-46 188.3 198 51.5
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.4e-37 161.0 225 40.4
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 9.2e-37 158.3 181 49.7
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 2.1e-33 147.1 277 37.9
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 2.4e-32 143.7 172 45.9
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 2.6e-31 140.2 261 33.7
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 5.8e-31 139.0 156 44.9
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.2e-28 131.3 136 52.2
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 1.6e-28 131.0 207 39.1
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.6e-25 119.8 130 51.5
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 1.7e-22 110.9 93 60.2
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-21 107.8 131 48.1
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.4e-21 107.1 222 36.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 2.1e-20 104.0 171 39.8
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 1.8e-19 100.9 163 39.9
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 6.7e-19 99.0 163 39.9
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 1.9e-18 97.4 189 36.0
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.1e-16 91.7 223 34.1
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.4e-16 91.3 61 70.5
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.3e-16 89.4 181 35.9
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.3e-16 89.4 181 35.9
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.7e-14 84.3 86 47.7
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 7.1e-13 79.0 65 56.9
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 3.5e-12 76.6 129 32.6
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 3.5e-12 76.6 128 37.5
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 1.9e-10 70.9 96 44.8
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.5e-10 70.5 61 57.4
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.3e-10 70.1 150 35.3
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.3e-10 70.1 61 57.4
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 5.3e-08 62.8 66 54.5
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 5.3e-08 62.8 148 30.4
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 1.2e-07 61.6 74 45.9
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.2e-06 57.4 131 33.6
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 4.9e-06 56.2 68 45.6
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 4.9e-06 56.2 68 45.6
VMungo0720G0209 Vigna mungo HOM05D005448 ORTHO05D006405 6.5e-06 55.8 89 34.8


User provided reference genes

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