Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 8.5e-199 696.8 353 100.0
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.5e-110 402.9 355 62.5
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.3e-110 402.1 355 62.0
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 6.9e-108 394.8 355 61.7
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 4.6e-104 382.1 327 60.2
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 7.4e-102 374.8 355 59.4
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 1.1e-100 370.9 322 59.0
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 6.9e-100 368.2 303 60.1
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 9.0e-100 367.9 326 57.4
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 2.0e-99 366.7 332 59.0
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 3.4e-99 365.9 355 58.3
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 4.5e-99 365.5 326 57.1
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 1.3e-98 364.0 355 53.0
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 2.9e-98 362.8 320 57.2
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 2.9e-98 362.8 326 57.1
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 3.8e-98 362.5 355 53.8
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 2.3e-95 353.2 331 54.4
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 1.1e-94 350.9 354 55.6
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 2.5e-94 349.7 331 56.2
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 1.6e-93 347.1 316 57.6
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 1.2e-91 340.9 343 53.1
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 1.0e-90 337.8 316 55.7
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 2.2e-90 336.7 334 53.6
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 6.5e-90 335.1 344 50.6
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 2.7e-88 329.7 318 54.4
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 3.0e-87 326.2 348 51.4
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 3.9e-87 325.9 356 51.4
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 3.9e-87 325.9 354 50.6
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 1.5e-86 323.9 329 50.5
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.5e-86 323.2 347 51.3
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 1.6e-85 320.5 337 52.2
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 3.7e-85 319.3 331 51.1
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 8.2e-85 318.2 320 53.1
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 1.1e-84 317.8 333 51.7
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 1.1e-84 317.8 333 50.8
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 1.1e-84 317.8 320 52.8
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 1.4e-84 317.4 322 52.2
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 2.4e-84 316.6 331 51.7
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 4.1e-84 315.8 320 53.4
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 1.3e-82 310.8 328 49.4
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 3.8e-82 309.3 331 50.2
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 8.5e-82 308.1 316 52.5
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 1.1e-81 307.8 343 49.6
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 4.2e-81 305.8 335 49.3
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 4.2e-81 305.8 332 51.2
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 4.2e-81 305.8 355 50.4
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 9.4e-81 304.7 354 48.9
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 2.1e-80 303.5 331 50.2
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 2.7e-80 303.1 328 51.2
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 3.6e-80 302.8 348 47.7
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 7.9e-80 301.6 312 52.6
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 1.0e-79 301.2 317 51.4
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.8e-79 300.4 354 48.0
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.3e-79 300.1 354 47.7
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 2.3e-79 300.1 331 49.5
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 3.0e-79 299.7 324 50.6
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 3.9e-79 299.3 354 47.2
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 3.9e-79 299.3 335 49.3
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 1.5e-78 297.4 320 50.0
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.5e-78 297.4 352 47.2
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 4.4e-78 295.8 339 50.1
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 7.4e-78 295.0 317 50.5
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 9.7e-78 294.7 337 46.0
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 1.7e-77 293.9 323 51.4
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 1.1e-73 281.2 344 43.9
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 1.4e-73 280.8 344 43.6
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 1.4e-73 280.8 344 44.2
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 1.4e-73 280.8 331 47.7
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 1.4e-73 280.8 322 47.8
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 4.2e-73 279.3 332 47.3
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 5.5e-73 278.9 346 44.2
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 7.2e-73 278.5 340 47.4
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 1.2e-72 277.7 335 45.7
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 1.2e-72 277.7 328 47.9
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 3.6e-72 276.2 344 43.6
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 3.6e-72 276.2 344 43.9
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 3.0e-71 273.1 316 45.3
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 1.5e-70 270.8 332 45.5
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 2.0e-70 270.4 316 46.2
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 3.3e-70 269.6 322 46.6
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 4.4e-70 269.2 345 43.5
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 4.4e-70 269.2 331 43.5
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 4.4e-70 269.2 323 45.2
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 5.7e-70 268.9 346 42.8
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 5.7e-70 268.9 346 42.8
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 2.2e-69 266.9 331 43.5
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 4.1e-68 262.7 335 43.6
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 9.4e-65 251.5 318 46.9
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.5e-62 244.2 268 48.5
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 1.9e-57 227.3 326 40.5
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 1.0e-55 221.5 222 52.3
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 9.5e-49 198.4 231 46.3
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 1.2e-48 198.0 234 46.2
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.8e-40 170.2 187 50.3
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 3.7e-37 159.8 163 49.7
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 1.7e-34 151.0 151 50.3
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 1.8e-31 141.0 136 57.4
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 2.3e-31 140.6 165 49.1
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 4.9e-29 132.9 113 58.4
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 7.3e-25 119.0 180 41.1
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.6e-22 110.5 99 55.6
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 1.9e-20 104.4 184 39.1
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 2.4e-12 77.4 116 41.4
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 9.2e-12 75.5 139 36.0
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 6.2e-08 62.8 73 47.9
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 5.2e-07 59.7 114 31.6
HanXRQChr11g0346401 Helianthus annuus HOM05D002986 ORTHO05D007611 6.9e-07 59.3 101 27.7
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 1.5e-06 58.2 231 22.5
Manes.09G043000 Manihot esculenta HOM05D006596 ORTHO05D008497 2.6e-06 57.4 122 33.6
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 4.4e-06 56.6 259 23.2
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 7.6e-06 55.8 52 44.2
Carub.0008s0183 Capsella rubella HOM05D002986 ORTHO05D007611 9.9e-06 55.5 89 32.6
Gohir.D05G161532 Gossypium hirsutum HOM05D002986 ORTHO05D007611 9.9e-06 55.5 89 30.3


User provided reference genes

Program Settings