Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold312G48267 Striga asiatica HOM05D031272 ORTHO05D051380 2.3e-84 315.5 150 100.0
SGA_v2.0_scaffold73G24230 Striga asiatica HOM05D031272 ORTHO05D406236 8.2e-26 120.9 93 65.6
SGA_v2.0_scaffold149G36520 Striga asiatica HOM05D000884 ORTHO05D002404 1.7e-23 113.2 83 63.9
SGA_v2.0_scaffold31G12883 Striga asiatica HOM05D002093 ORTHO05D051380 3.7e-18 95.5 58 82.8
SGA_v2.0_scaffold39G15300 Striga asiatica HOM05D031272 ORTHO05D402280 2.8e-10 69.3 108 40.7
SGA_v2.0_scaffold94G28535 Striga asiatica HOM05D002093 ORTHO05D401204 8.2e-10 67.8 39 79.5
Migut.H00432 Erythranthe guttata HOM05D002093 ORTHO05D003877 2.0e-08 63.2 89 44.9
MSTRG.2884 Avicennia marina HOM05D002093 ORTHO05D003877 4.5e-08 62.0 49 61.2
Oeu018957.1 Olea europaea HOM05D002093 ORTHO05D003877 1.3e-07 60.5 48 54.2
CiPaw.02G008200 Carya illinoinensis HOM05D002093 ORTHO05D003877 1.7e-07 60.1 48 58.3
COL.COLO4_11417 Corchorus olitorius HOM05D002093 ORTHO05D003877 1.7e-07 60.1 48 58.3
Oeu031953.1 Olea europaea HOM05D002093 ORTHO05D003877 2.2e-07 59.7 48 56.2
Solyc02g090870.1 Solanum lycopersicum HOM05D002093 ORTHO05D003877 2.2e-07 59.7 89 44.9
Sopen02g035520 Solanum pennellii HOM05D002093 ORTHO05D003877 2.2e-07 59.7 89 44.9
PGSC0003DMG400004041 Solanum tuberosum HOM05D002093 ORTHO05D003877 2.2e-07 59.7 89 44.9
VMungo1215G2131 Vigna mungo HOM05D002093 ORTHO05D003877 2.2e-07 59.7 49 57.1
Ca_24769_v3 Cicer arietinum L. HOM05D002093 ORTHO05D003877 2.9e-07 59.3 49 57.1
Medtr5g017410 Medicago truncatula HOM05D002093 ORTHO05D003877 2.9e-07 59.3 49 57.1
MSTRG.15388 Avicennia marina HOM05D002093 ORTHO05D003877 3.8e-07 58.9 49 55.1
Cc07_g06000 Coffea canephora HOM05D002093 ORTHO05D003877 3.8e-07 58.9 48 60.4
Migut.K00766 Erythranthe guttata HOM05D002093 ORTHO05D003877 3.8e-07 58.9 48 58.3
Phvul.002G018800 Phaseolus vulgaris HOM05D002093 ORTHO05D003877 3.8e-07 58.9 49 57.1
CANSAT01G0818 Cannabis sativa HOM05D002093 ORTHO05D003877 5.0e-07 58.5 48 58.3
CAN.G660.8 Capsicum annuum HOM05D002093 ORTHO05D003877 5.0e-07 58.5 48 62.5
Duzib147G0327 Durio zibethinus HOM05D002093 ORTHO05D003877 5.0e-07 58.5 48 58.3
ClCG01G016830 Citrullus lanatus HOM05D002093 ORTHO05D003877 6.5e-07 58.2 90 41.1
Gohir.A11G192500 Gossypium hirsutum HOM05D002093 ORTHO05D003877 6.5e-07 58.2 59 54.2
Sabra05G0112200 Salix brachista HOM05D002093 ORTHO05D003877 6.5e-07 58.2 89 42.7
TPR.G30703 Trifolium pratense HOM05D002093 ORTHO05D003877 6.5e-07 58.2 49 55.1
vmacro05338 Vaccinium macrocarpon HOM05D002093 ORTHO05D003877 6.5e-07 58.2 76 44.7
Cfa004024 Carpinus fangiana HOM05D002093 ORTHO05D003877 8.5e-07 57.8 59 52.5
Haze_15397 Corylus avellana HOM05D002093 ORTHO05D003877 8.5e-07 57.8 59 52.5
MELO3C000152.2 Cucumis melo HOM05D002093 ORTHO05D003877 8.5e-07 57.8 90 41.1
Glyma.01G186100 Glycine max HOM05D002093 ORTHO05D003877 8.5e-07 57.8 49 55.1
Glyma.11G055900 Glycine max HOM05D002093 ORTHO05D003877 8.5e-07 57.8 49 55.1
Potri.007G044200 Populus trichocarpa HOM05D002093 ORTHO05D003877 8.5e-07 57.8 59 52.5
Sabra07G0038900 Salix brachista HOM05D002093 ORTHO05D003877 8.5e-07 57.8 59 52.5
Hma1.2p1_1705F.1_g298390 Hydrangea macrophylla HOM05D002093 ORTHO05D003877 1.1e-06 57.4 48 56.2
CsaV3_6G043270 Cucumis sativus L. HOM05D002093 ORTHO05D003877 1.4e-06 57.0 90 40.0
Gohir.D11G199200 Gossypium hirsutum HOM05D002093 ORTHO05D003877 1.4e-06 57.0 59 52.5
Gorai.007G213400 Gossypium raimondii HOM05D002093 ORTHO05D003877 1.4e-06 57.0 59 52.5
Lj2g0008573 Lotus japonicus HOM05D002093 ORTHO05D003877 1.4e-06 57.0 49 53.1
Peaxi162Scf00450g00035 Petunia axillaris HOM05D002093 ORTHO05D003877 1.4e-06 57.0 48 60.4
Rhsim08G0100300 Rhododendron simsii HOM05D002093 ORTHO05D003877 1.4e-06 57.0 89 42.7
Sed0000549 Sechium edule HOM05D002093 ORTHO05D003877 1.4e-06 57.0 48 58.3
Rhsim10G0117500 Rhododendron simsii HOM05D002093 ORTHO05D003877 1.9e-06 56.6 48 54.2
TWI73G0884 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 1.9e-06 56.6 48 54.2
GSVIVG01022129001 Vitis vinifera HOM05D002093 ORTHO05D003877 1.9e-06 56.6 48 56.2
CSS0014053 Camellia sinensis var. sinensis HOM05D002093 ORTHO05D003877 2.5e-06 56.2 89 41.6
TWI09G1584 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 2.5e-06 56.2 48 54.2
Cpa.g.sc55.147 Carica papaya HOM05D002093 ORTHO05D003877 3.2e-06 55.8 46 56.5
CiPaw.01G018000 Carya illinoinensis HOM05D002093 ORTHO05D003877 3.2e-06 55.8 48 54.2
Gohir.A12G070900 Gossypium hirsutum HOM05D002093 ORTHO05D003877 3.2e-06 55.8 48 56.2
Gohir.D12G069400 Gossypium hirsutum HOM05D002093 ORTHO05D003877 3.2e-06 55.8 48 56.2
Gorai.008G076000 Gossypium raimondii HOM05D002093 ORTHO05D003877 3.2e-06 55.8 48 56.2
MBI03_g13471_MAGBIO Magnolia biondii HOM05D002093 ORTHO05D003877 3.2e-06 55.8 48 56.2
TAR625G0453 Trochodendron aralioides HOM05D002093 ORTHO05D003877 3.2e-06 55.8 49 53.1
Psat2g167200 Pisum sativum HOM05D002093 ORTHO05D003877 4.2e-06 55.5 49 51.0
Potri.005G138300 Populus trichocarpa HOM05D002093 ORTHO05D003877 4.2e-06 55.5 89 41.6
Thecc.01G056400 Theobroma cacao HOM05D002093 ORTHO05D003877 4.2e-06 55.5 48 56.2
Atru.chr3.326 Acer truncatum HOM05D002093 ORTHO05D003877 5.5e-06 55.1 88 42.0
Dinv39847 Davidia involucrata HOM05D002093 ORTHO05D003877 5.5e-06 55.1 48 54.2
Manes.13G124200 Manihot esculenta HOM05D002093 ORTHO05D003877 5.5e-06 55.1 48 54.2
QL06p041362 Quercus lobata HOM05D002093 ORTHO05D003877 5.5e-06 55.1 48 54.2
Actinidia36495 Actinidia chinensis HOM05D002093 ORTHO05D003877 7.2e-06 54.7 48 54.2
Manes.12G106900 Manihot esculenta HOM05D002093 ORTHO05D003877 7.2e-06 54.7 48 54.2
TAR381G1348 Trochodendron aralioides HOM05D002093 ORTHO05D003877 7.2e-06 54.7 48 56.2
MSTRG.23745 Avicennia marina HOM05D002093 ORTHO05D003877 9.4e-06 54.3 87 41.4
A07p16910 Brassica napus HOM05D002093 ORTHO05D003877 9.4e-06 54.3 45 57.8
BraA07t29417Z Brassica rapa HOM05D002093 ORTHO05D003877 9.4e-06 54.3 45 57.8


User provided reference genes

Program Settings