Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 2.4e-114 415.6 225 100.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 4.6e-73 278.5 230 67.0
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 5.1e-72 275.0 219 67.1
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.9e-71 273.1 219 66.7
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.1e-66 257.3 218 67.4
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.6e-65 253.4 206 66.5
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.1e-65 253.1 241 65.1
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.0e-64 250.8 196 67.9
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 2.3e-64 249.6 241 60.2
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.8e-62 242.7 215 63.7
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.1e-61 240.7 252 57.1
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 5.3e-61 238.4 218 59.6
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 6.9e-61 238.0 221 60.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.0e-60 236.5 210 62.4
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 2.6e-60 236.1 223 57.0
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.4e-60 235.3 224 59.4
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 7.6e-60 234.6 224 60.7
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 9.9e-60 234.2 211 61.6
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 9.9e-60 234.2 224 58.9
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.3e-59 233.8 210 62.9
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 2.2e-59 233.0 203 65.0
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 2.2e-59 233.0 223 60.1
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.9e-59 231.9 211 60.7
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 8.4e-59 231.1 218 59.2
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 8.4e-59 231.1 210 61.4
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 8.4e-59 231.1 210 61.4
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.1e-58 230.7 225 59.1
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.1e-58 230.7 210 61.0
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.9e-58 229.9 211 60.7
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.4e-58 229.6 220 60.0
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 3.2e-58 229.2 206 61.2
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 3.2e-58 229.2 206 61.2
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.2e-58 228.8 211 60.2
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 5.4e-58 228.4 218 58.7
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 9.3e-58 227.6 206 62.1
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.3e-58 227.6 213 60.6
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.2e-57 227.3 199 64.8
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.2e-57 227.3 231 59.7
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.6e-57 226.9 214 59.3
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.6e-57 226.9 216 58.3
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.7e-57 226.1 225 56.9
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 4.6e-57 225.3 193 60.6
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 6.0e-57 224.9 228 57.0
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.3e-56 223.0 200 59.5
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 3.9e-56 222.2 205 58.0
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 5.1e-56 221.9 213 58.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 5.1e-56 221.9 208 61.5
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 6.6e-56 221.5 219 61.2
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 8.7e-56 221.1 228 54.4
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.5e-55 220.3 229 55.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 4.3e-55 218.8 214 57.0
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 5.6e-55 218.4 209 56.5
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 5.6e-55 218.4 209 56.5
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 9.6e-55 217.6 214 58.4
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.6e-54 216.9 212 65.6
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.6e-54 216.9 196 60.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.1e-54 216.5 222 59.5
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 8.1e-54 214.5 179 66.5
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.1e-53 214.2 222 54.5
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.4e-53 213.8 206 61.7
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.4e-53 213.8 194 60.3
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 5.3e-53 211.8 213 62.0
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.3e-53 211.8 194 59.8
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 6.9e-53 211.5 206 59.7
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 6.9e-53 211.5 232 52.6
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 9.0e-53 211.1 200 60.5
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.2e-52 210.7 256 51.6
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.5e-52 210.3 223 57.0
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.4e-52 209.1 223 52.9
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 4.5e-52 208.8 231 54.5
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.8e-52 208.4 214 55.1
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.3e-51 207.2 203 56.2
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.7e-51 206.8 230 55.2
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.7e-51 206.8 230 57.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 6.4e-51 204.9 219 53.4
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.9e-50 203.4 215 55.3
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 9.3e-50 201.1 224 54.5
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.6e-49 200.3 224 59.4
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.1e-49 199.9 216 55.6
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 2.7e-49 199.5 209 54.1
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 6.0e-49 198.4 276 47.8
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 6.0e-49 198.4 194 60.8
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 6.0e-49 198.4 213 54.9
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.3e-48 197.2 205 63.4
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-48 197.2 208 56.2
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.0e-48 196.1 217 51.2
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.9e-48 195.7 208 55.8
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 5.1e-48 195.3 220 51.8
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 5.1e-48 195.3 220 51.8
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 8.7e-48 194.5 226 51.8
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 8.7e-48 194.5 238 54.2
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 8.7e-48 194.5 203 56.7
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.9e-47 193.4 200 55.5
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.9e-47 193.4 218 51.8
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.3e-47 192.2 246 51.2
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 5.6e-47 191.8 213 51.2
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 6.2e-46 188.3 214 49.5
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 6.2e-46 188.3 214 49.5
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 6.2e-46 188.3 199 52.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 8.1e-46 188.0 171 57.9
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-45 187.6 214 49.5
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-45 187.6 214 49.5
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.1e-45 187.6 215 49.8
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.1e-45 186.0 180 55.0
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 3.1e-45 186.0 180 55.0
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 4.0e-45 185.7 169 55.0
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 4.5e-44 182.2 209 48.8
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.0e-43 181.0 204 51.0
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.3e-43 180.6 213 52.6
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-43 180.3 234 47.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.2e-43 179.9 208 51.0
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 3.8e-43 179.1 179 57.5
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 6.5e-43 178.3 233 46.8
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 5.5e-42 175.3 233 50.2
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 9.3e-42 174.5 178 57.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.2e-41 174.1 177 57.1
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.1e-41 173.3 178 56.7
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 3.5e-41 172.6 214 48.6
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 6.0e-41 171.8 212 51.4
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.0e-40 171.0 177 52.0
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-39 167.5 215 54.0
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 7.4e-39 164.9 182 52.2
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 9.6e-39 164.5 177 57.6
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.6e-38 163.7 195 47.2
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 3.7e-38 162.5 232 44.0
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 6.3e-38 161.8 145 53.8
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.1e-37 161.0 176 55.1
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.6e-36 156.4 145 61.4
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.7e-35 153.7 229 44.1
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.2e-35 153.3 184 51.1
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 6.5e-35 151.8 186 53.8
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.1e-34 151.0 182 52.2
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 9.3e-34 147.9 91 71.4
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 3.5e-33 146.0 169 46.7
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 5.1e-32 142.1 199 44.2
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 4.8e-30 135.6 165 50.3
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 8.2e-30 134.8 99 61.6
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 3.8e-27 125.9 161 41.6
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 8.5e-27 124.8 82 68.3
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.5e-26 122.1 138 58.0
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.1e-25 118.6 119 53.8
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 4.3e-23 112.5 63 68.3
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 4.3e-23 112.5 160 38.8
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 8.2e-22 108.2 140 67.9
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 9.1e-21 104.8 138 50.0
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 7.7e-20 101.7 78 57.7
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.7e-19 100.5 134 49.3
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.9e-19 99.8 185 43.2
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 3.8e-19 99.4 154 59.1
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.1e-18 97.8 79 55.7
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 7.2e-18 95.1 128 51.6
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.0e-16 91.3 159 47.8
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 3.0e-16 89.7 88 59.1
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.3e-14 84.3 203 36.0
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.3e-14 84.3 135 58.5
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 4.8e-14 82.4 101 42.6
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 8.2e-14 81.6 78 65.4
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.4e-13 80.9 147 52.4
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 1.7e-11 73.9 126 43.7
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 8.5e-11 71.6 56 53.6
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.7e-09 65.9 103 50.5
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.0e-08 62.8 43 72.1
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 4.0e-08 62.8 86 51.2
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 5.2e-08 62.4 134 46.3
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 2.0e-07 60.5 95 41.1
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.8e-06 56.6 41 61.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 3.7e-06 56.2 48 45.8
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 8.2e-06 55.1 47 44.7


User provided reference genes

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