Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 6.7e-249 863.6 450 100.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.6e-178 629.8 450 73.6
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 4.3e-155 552.0 450 64.4
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.5e-147 526.2 439 64.0
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 3.1e-121 439.5 497 50.9
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 3.6e-109 399.4 466 51.3
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.9e-108 396.0 438 50.5
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.4e-107 392.5 446 48.7
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.4e-105 387.5 466 50.0
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.1e-102 377.9 467 49.5
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.4e-102 377.5 462 50.0
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.9e-102 377.1 464 48.9
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.1e-101 373.6 459 47.9
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.3e-100 370.2 480 48.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.3e-100 370.2 466 47.6
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 6.7e-100 368.6 462 48.9
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.1e-99 367.9 453 48.3
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.6e-99 366.7 479 48.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 5.7e-99 365.5 459 48.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.7e-99 365.5 480 47.7
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 5.7e-99 365.5 472 48.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.2e-98 363.6 460 49.3
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 8.2e-98 361.7 469 48.4
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 9.1e-97 358.2 466 47.0
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 9.1e-97 358.2 450 46.7
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 2.6e-96 356.7 454 46.5
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 3.5e-96 356.3 451 48.1
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.5e-96 356.3 465 48.6
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 4.5e-96 355.9 463 47.7
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 4.5e-96 355.9 468 47.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 5.0e-95 352.4 465 49.5
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 6.5e-95 352.1 468 44.0
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.5e-94 350.9 466 46.6
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.5e-94 350.1 476 47.1
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 5.5e-94 349.0 463 47.5
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 7.2e-94 348.6 462 45.9
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-93 347.8 466 48.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.2e-93 347.8 466 47.2
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.2e-93 347.8 492 44.3
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.1e-93 347.1 464 46.8
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.7e-93 345.9 471 44.8
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 8.0e-93 345.1 452 48.0
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.0e-92 344.7 450 47.3
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.0e-92 342.8 461 46.9
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 5.2e-92 342.4 473 45.9
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 8.8e-92 341.7 461 46.0
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.0e-91 340.5 453 45.7
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.6e-91 340.1 465 46.0
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 5.7e-91 339.0 464 45.0
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 7.5e-91 338.6 484 45.0
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 9.7e-91 338.2 454 46.9
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.7e-91 338.2 468 45.1
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 9.7e-91 338.2 473 44.8
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.3e-90 337.8 472 45.1
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.3e-90 337.8 469 44.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.7e-90 337.4 458 46.5
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.2e-90 337.0 457 47.0
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.2e-90 337.0 457 47.0
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.8e-90 335.9 480 43.8
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.8e-90 335.9 471 43.5
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.8e-90 335.9 457 45.5
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 8.3e-90 335.1 370 50.5
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.1e-89 334.7 477 45.9
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 4.1e-89 332.8 453 45.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.1e-89 332.8 468 44.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.3e-89 332.4 380 49.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 9.1e-89 331.6 481 43.7
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.0e-87 328.2 455 46.8
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.0e-87 328.2 443 45.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.7e-87 327.4 464 43.5
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 1.7e-87 327.4 303 57.8
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 2.2e-87 327.0 463 44.3
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.2e-87 327.0 530 42.1
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.9e-86 323.9 461 45.3
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 4.2e-86 322.8 378 48.1
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.7e-85 320.1 468 41.9
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.7e-85 319.3 454 45.6
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.0e-84 318.2 454 44.9
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.8e-84 317.4 470 43.4
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 4.0e-84 316.2 463 43.6
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.0e-84 316.2 468 42.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.2e-84 315.8 454 45.4
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 8.8e-84 315.1 385 45.7
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 8.8e-84 315.1 384 45.8
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 4.4e-83 312.8 385 45.2
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 5.7e-83 312.4 467 41.3
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 9.8e-83 311.6 373 46.9
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 9.8e-83 311.6 340 50.6
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.8e-82 310.1 467 43.0
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.7e-82 309.7 468 42.5
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.8e-82 309.3 413 43.8
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 2.4e-81 307.0 456 42.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.4e-81 307.0 418 45.5
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.1e-81 306.6 466 40.3
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.1e-81 306.6 477 42.6
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 5.4e-81 305.8 478 41.4
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.2e-80 304.7 381 47.2
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.6e-80 304.3 459 41.6
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.0e-80 303.9 459 41.4
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 4.5e-80 302.8 522 38.7
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.3e-79 300.4 468 41.5
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.3e-79 300.4 454 43.8
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.3e-79 300.4 374 44.1
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.9e-79 300.1 447 41.8
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 3.8e-79 299.7 459 41.4
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.8e-79 299.7 454 43.6
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.8e-79 299.7 347 48.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.9e-78 297.4 592 36.5
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.5e-78 297.0 470 41.3
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 2.5e-78 297.0 459 40.3
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.5e-78 295.8 466 41.8
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.1e-77 293.9 468 39.7
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.1e-77 293.9 468 39.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 2.8e-77 293.5 467 40.3
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 6.1e-77 292.4 468 42.5
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.4e-76 291.2 472 41.5
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.4e-76 291.2 393 45.3
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.8e-76 290.8 472 41.5
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 3.0e-76 290.0 455 42.0
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 5.2e-76 289.3 455 41.5
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.5e-75 287.7 369 45.0
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.1e-73 281.6 467 39.6
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.8e-73 280.8 422 43.4
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 2.4e-73 280.4 437 43.0
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.2e-72 278.1 283 54.1
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.0e-72 277.3 449 39.9
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.3e-71 274.6 465 38.7
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.9e-71 273.1 358 43.0
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.1e-70 271.6 388 44.3
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.5e-70 271.2 476 37.4
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 9.5e-70 268.5 302 49.3
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 8.0e-69 265.4 445 38.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.3e-62 243.4 409 39.4
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 6.2e-61 239.2 423 38.5
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-60 238.0 369 39.8
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.1e-60 236.9 304 46.7
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 3.1e-60 236.9 375 42.1
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.6e-59 233.8 357 40.6
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.4e-59 233.0 327 40.7
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 9.8e-59 231.9 263 49.4
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.2e-58 230.7 314 41.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.9e-58 230.3 370 41.6
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.4e-57 227.3 219 57.5
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 4.1e-57 226.5 302 43.0
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 6.0e-56 222.6 311 43.4
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.6e-53 214.5 311 42.4
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.6e-53 214.5 309 40.8
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.6e-53 213.4 448 35.7
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 6.2e-53 212.6 367 37.9
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.2e-52 209.5 455 33.2
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 9.9e-51 205.3 374 38.2
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.0e-48 196.1 297 37.0
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.8e-45 187.2 219 46.6
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 4.7e-45 186.4 134 68.7
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 4.4e-43 179.9 205 50.2
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 7.6e-43 179.1 317 36.0
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.2e-42 177.6 284 37.3
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.9e-42 176.4 238 46.2
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-41 174.9 198 49.5
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.2e-41 173.3 210 44.8
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 5.4e-41 172.9 374 34.5
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.5e-38 164.1 298 39.6
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.8e-36 157.9 340 35.6
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-32 144.8 144 52.8
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 9.0e-28 129.0 207 42.5
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.6e-27 127.5 91 71.4
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 4.5e-27 126.7 220 38.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.2e-25 120.6 197 38.6
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.0e-24 116.3 94 59.6
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.7e-21 107.1 190 35.8
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.0e-18 99.0 208 35.6
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 6.7e-15 86.3 63 68.3
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.3e-14 84.0 82 54.9
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.4e-14 82.8 79 54.4
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.1e-12 79.0 82 47.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 3.2e-09 67.4 57 61.4
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 3.9e-07 60.5 65 53.8
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.1e-06 58.9 129 30.2


User provided reference genes

Program Settings