Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 3.2e-75 285.0 145 100.0
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 1.7e-44 183.0 166 64.5
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 3.8e-44 181.8 166 64.5
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 5.3e-30 134.8 178 49.4
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 9.9e-29 130.6 178 47.8
SGA_v2.0_scaffold440G51651 Striga asiatica HOM05D007006 ORTHO05D008925 7.9e-26 120.9 68 92.6
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 1.9e-24 116.3 174 46.6
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 5.6e-24 114.8 83 69.9
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 7.6e-21 104.4 151 46.4
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 4.9e-20 101.7 57 84.2
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 4.9e-20 101.7 57 84.2
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 8.4e-20 100.9 149 45.6
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 1.4e-19 100.1 106 54.7
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 1.9e-19 99.8 57 82.5
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 1.9e-19 99.8 72 68.1
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 1.9e-19 99.8 57 82.5
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 2.5e-19 99.4 85 63.5
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 2.5e-19 99.4 91 60.4
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 2.5e-19 99.4 147 46.3
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.5e-19 99.4 147 46.3
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.5e-19 99.4 147 46.3
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 2.5e-19 99.4 57 80.7
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 2.5e-19 99.4 57 78.9
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 5.5e-19 98.2 57 82.5
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 7.1e-19 97.8 57 80.7
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 7.1e-19 97.8 158 44.3
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 9.3e-19 97.4 133 47.4
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 1.6e-18 96.7 151 43.0
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 3.5e-18 95.5 152 44.1
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 3.5e-18 95.5 57 78.9
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 3.5e-18 95.5 131 46.6
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 3.5e-18 95.5 131 46.6
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 3.5e-18 95.5 131 46.6
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 4.6e-18 95.1 150 43.3
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 4.6e-18 95.1 135 45.2
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 4.6e-18 95.1 148 42.6
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 6.0e-18 94.7 62 67.7
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 6.0e-18 94.7 57 78.9
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 7.9e-18 94.4 145 42.1
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 7.9e-18 94.4 59 76.3
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 7.9e-18 94.4 133 45.9
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 1.0e-17 94.0 110 52.7
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 1.0e-17 94.0 62 69.4
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 1.0e-17 94.0 57 77.2
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 1.3e-17 93.6 59 71.2
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 1.8e-17 93.2 57 75.4
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 2.3e-17 92.8 113 50.4
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 2.3e-17 92.8 59 72.9
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 2.3e-17 92.8 168 41.1
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 2.3e-17 92.8 131 46.6
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 2.3e-17 92.8 166 39.2
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 3.0e-17 92.4 148 42.6
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 3.0e-17 92.4 57 75.4
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 3.0e-17 92.4 138 42.8
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 3.9e-17 92.0 57 77.2
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 5.1e-17 91.7 167 38.3
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 5.1e-17 91.7 141 43.3
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 5.1e-17 91.7 57 75.4
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 8.7e-17 90.9 57 75.4
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 8.7e-17 90.9 57 75.4
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 8.7e-17 90.9 140 42.9
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 1.1e-16 90.5 127 44.9
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 1.1e-16 90.5 131 43.5
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 1.1e-16 90.5 145 42.1
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 1.1e-16 90.5 57 77.2
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 1.5e-16 90.1 155 40.6
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 1.9e-16 89.7 57 71.9
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 1.9e-16 89.7 57 73.7
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 1.9e-16 89.7 57 71.9
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 1.9e-16 89.7 57 75.4
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 2.5e-16 89.4 59 69.5
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 2.5e-16 89.4 57 73.7
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 2.5e-16 89.4 132 43.9
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 2.5e-16 89.4 136 42.6
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 2.5e-16 89.4 59 71.2
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 2.5e-16 89.4 146 41.8
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 3.3e-16 89.0 132 43.9
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 3.3e-16 89.0 57 70.2
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 3.3e-16 89.0 57 73.7
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 4.3e-16 88.6 58 74.1
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 4.3e-16 88.6 58 74.1
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 4.3e-16 88.6 57 73.7
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 4.3e-16 88.6 57 73.7
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 4.3e-16 88.6 138 41.3
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 7.4e-16 87.8 57 71.9
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 9.7e-16 87.4 57 70.2
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 1.3e-15 87.0 57 70.2
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 1.6e-15 86.7 129 43.4
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 2.2e-15 86.3 128 42.2
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 3.7e-15 85.5 127 44.1
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 3.7e-15 85.5 125 44.0
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 6.3e-15 84.7 151 39.7
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 8.2e-15 84.3 127 41.7
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 8.2e-15 84.3 57 68.4
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 1.1e-14 84.0 159 40.3
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 1.4e-14 83.6 174 38.5
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 1.4e-14 83.6 174 38.5
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 1.5e-13 80.1 133 39.1
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 2.0e-13 79.7 47 76.6
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 1.0e-12 77.4 132 39.4
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 1.3e-12 77.0 57 66.7
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 8.5e-12 74.3 146 37.0
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 8.5e-12 74.3 57 63.2
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 3.2e-11 72.4 57 59.6
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 1.2e-10 70.5 51 62.7
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 1.6e-10 70.1 132 38.6
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 2.3e-09 66.2 51 58.8


User provided reference genes

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