Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 0.0e+00 1118.6 620 100.0
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 3.1e-87 327.0 455 46.8
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 2.2e-64 251.1 455 42.6
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 2.8e-64 250.8 453 41.9
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 7.4e-57 226.1 459 40.1
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 6.5e-45 186.4 440 34.1
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.8e-42 178.3 463 34.6
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 4.4e-41 173.7 478 35.8
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.7e-40 171.8 429 35.7
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 5.4e-39 166.8 468 32.7
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 8.5e-37 159.5 432 32.6
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.5e-36 158.7 419 34.4
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 1.2e-35 155.6 411 32.1
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.6e-35 155.2 420 32.6
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 6.1e-35 153.3 444 33.3
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 6.8e-34 149.8 417 35.0
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 1.7e-32 145.2 399 33.1
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.2e-32 144.8 411 31.6
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 2.8e-32 144.4 503 30.2
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 2.8e-32 144.4 425 32.2
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 6.3e-32 143.3 441 32.2
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 8.3e-32 142.9 414 33.1
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 3.1e-31 141.0 425 29.9
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 5.4e-31 140.2 427 33.3
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 7.0e-31 139.8 165 47.9
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.2e-30 139.0 406 32.5
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 1.2e-30 139.0 418 30.6
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-30 138.7 413 31.5
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-30 138.7 413 31.5
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.6e-30 138.7 417 30.2
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 3.5e-30 137.5 422 30.1
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.5e-30 137.5 235 42.1
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 5.9e-30 136.7 410 31.2
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 7.8e-30 136.3 240 38.3
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 7.8e-30 136.3 484 32.0
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.0e-29 136.0 498 30.9
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.3e-29 135.6 399 31.8
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 1.3e-29 135.6 448 30.4
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 5.0e-29 133.7 453 30.9
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 6.6e-29 133.3 445 34.2
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.1e-28 132.5 235 41.7
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 1.9e-28 131.7 427 30.0
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 3.3e-28 131.0 437 30.0
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.3e-28 131.0 463 28.5
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 5.6e-28 130.2 408 32.1
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 7.3e-28 129.8 456 32.0
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 1.6e-27 128.6 413 29.5
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 3.6e-27 127.5 407 32.4
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 3.6e-27 127.5 414 33.3
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 8.0e-27 126.3 212 38.7
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.0e-26 125.9 414 29.5
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.0e-26 125.9 405 29.9
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.0e-26 125.9 405 29.9
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.4e-26 125.6 412 34.2
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.8e-26 125.2 453 29.4
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.3e-26 124.8 400 30.0
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 4.0e-26 124.0 438 31.1
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 5.2e-26 123.6 399 29.6
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 5.2e-26 123.6 468 28.6
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 6.8e-26 123.2 446 28.0
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 8.9e-26 122.9 407 27.5
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.2e-25 122.5 445 29.7
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 1.2e-25 122.5 227 40.1
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 2.0e-25 121.7 399 30.3
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 3.4e-25 120.9 432 26.6
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 4.4e-25 120.6 507 27.2
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 5.7e-25 120.2 431 32.0
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 7.5e-25 119.8 469 27.9
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 7.5e-25 119.8 407 28.5
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 7.5e-25 119.8 509 30.5
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.7e-24 118.6 405 29.9
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.2e-24 118.2 146 46.6
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.9e-24 117.9 100 57.0
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 3.7e-24 117.5 431 29.0
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 3.7e-24 117.5 426 28.6
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.9e-24 117.1 444 28.2
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 6.4e-24 116.7 142 44.4
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 6.4e-24 116.7 398 28.4
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 6.4e-24 116.7 403 28.8
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 6.4e-24 116.7 403 27.3
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 8.3e-24 116.3 543 26.2
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.1e-23 115.9 469 27.7
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.1e-23 115.9 459 26.8
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.1e-23 115.9 501 29.3
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.4e-23 115.5 440 28.9
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.4e-23 115.5 109 55.0
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.8e-23 115.2 413 31.5
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 1.8e-23 115.2 438 29.2
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 2.4e-23 114.8 402 27.6
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 4.1e-23 114.0 406 30.5
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 5.4e-23 113.6 567 26.5
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 9.2e-23 112.8 484 28.1
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 9.2e-23 112.8 457 28.4
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 9.2e-23 112.8 457 28.4
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 9.2e-23 112.8 419 31.0
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 1.2e-22 112.5 442 27.4
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.7e-22 111.3 403 28.0
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 2.7e-22 111.3 116 50.0
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 3.5e-22 110.9 469 28.8
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 4.6e-22 110.5 197 36.0
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 5.9e-22 110.2 443 29.6
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 7.8e-22 109.8 396 28.5
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 7.8e-22 109.8 104 54.8
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 7.8e-22 109.8 233 37.8
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 1.0e-21 109.4 402 29.1
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 1.3e-21 109.0 399 30.1
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.3e-21 109.0 482 27.2
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 3.9e-21 107.5 559 25.9
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 3.9e-21 107.5 397 30.2
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.0e-21 107.1 483 26.9
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.1e-20 105.9 104 50.0
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.5e-20 105.5 103 52.4
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 4.3e-20 104.0 103 52.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.3e-20 104.0 249 34.1
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.5e-20 102.8 516 25.8
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.2e-19 102.4 513 25.3
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.2e-19 102.4 104 50.0
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 2.1e-19 101.7 515 24.9
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 2.8e-19 101.3 101 47.5
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.8e-19 101.3 230 35.7
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 3.6e-19 100.9 399 26.8
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.4e-18 99.0 523 26.6
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.8e-18 98.6 441 28.8
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 4.0e-18 97.4 263 36.5
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 4.0e-18 97.4 431 25.1
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 5.2e-18 97.1 426 26.5
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 5.2e-18 97.1 109 44.0
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 6.8e-18 96.7 426 26.5
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 2.0e-17 95.1 112 46.4
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.7e-16 92.0 394 27.2
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 2.9e-16 91.3 409 29.3
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 7.0e-15 86.7 509 25.0
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 3.9e-13 80.9 510 25.1
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.8e-11 74.7 427 24.6
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 8.1e-11 73.2 109 38.5
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 5.2e-10 70.5 105 39.0
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 1.5e-09 68.9 102 46.1
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 2.6e-09 68.2 129 34.9
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.3e-08 65.9 99 39.4
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 2.9e-08 64.7 102 38.2
SGA_v2.0_scaffold51G18683 Striga asiatica HOM05D004833 ORTHO05D005671 2.9e-08 64.7 319 28.5
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 6.4e-08 63.5 85 44.7
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 6.4e-08 63.5 48 62.5
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 1.1e-07 62.8 62 53.2
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 1.4e-07 62.4 57 54.4
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.6e-06 58.9 40 70.0
CSS0042089 Camellia sinensis var. sinensis HOM05D004938 ORTHO05D006035 6.0e-06 57.0 124 31.5
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 6.0e-06 57.0 124 31.5
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 7.8e-06 56.6 39 64.1


User provided reference genes

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