Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 4.5e-126 454.5 215 100.0
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 4.3e-97 358.2 182 90.7
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 2.6e-94 349.0 182 88.5
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 2.6e-94 349.0 182 88.5
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 8.5e-93 344.0 182 85.7
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 3.7e-88 328.6 178 83.7
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.4e-87 325.9 182 79.7
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 2.4e-87 325.9 182 79.7
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.2e-86 323.6 182 78.0
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.6e-86 322.4 177 82.5
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 5.9e-86 321.2 182 76.9
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 7.7e-86 320.9 181 80.7
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 8.5e-85 317.4 182 77.5
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 8.5e-85 317.4 182 77.5
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 8.5e-85 317.4 182 78.6
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.1e-84 317.0 180 80.0
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 3.2e-84 315.5 182 76.9
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 3.2e-84 315.5 181 76.8
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 5.5e-84 314.7 183 78.7
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 5.5e-84 314.7 183 78.7
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 5.5e-84 314.7 182 78.0
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.2e-83 313.5 182 76.9
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.6e-83 313.2 182 76.9
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 3.6e-83 312.0 177 78.5
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 3.6e-83 312.0 180 79.4
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 4.7e-83 311.6 177 78.5
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.1e-83 311.2 182 75.3
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 6.1e-83 311.2 185 76.8
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 8.0e-83 310.8 175 78.9
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.0e-83 310.8 182 75.8
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.0e-83 310.8 185 74.6
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 8.0e-83 310.8 182 75.3
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.0e-82 310.5 182 75.3
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.4e-82 310.1 180 76.7
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.8e-82 309.7 182 75.3
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.8e-82 309.7 197 74.1
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 2.3e-82 309.3 182 76.4
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 3.0e-82 308.9 182 75.8
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 3.0e-82 308.9 182 75.8
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.0e-82 308.9 182 74.7
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 4.0e-82 308.5 185 74.6
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 6.7e-82 307.8 178 77.0
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.7e-82 307.8 182 75.3
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.1e-81 307.0 182 74.2
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.5e-81 306.6 179 74.3
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.5e-81 306.6 198 71.7
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.6e-81 305.8 176 75.0
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.4e-81 305.1 182 74.7
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 5.7e-81 304.7 175 77.1
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 5.7e-81 304.7 175 76.6
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 7.5e-81 304.3 182 73.1
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.3e-80 303.5 175 77.1
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.3e-80 303.5 179 74.9
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.3e-80 303.5 182 73.6
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.7e-80 303.1 175 75.4
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.2e-80 302.8 199 69.3
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 2.8e-80 302.4 182 72.0
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 2.8e-80 302.4 175 76.0
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 3.7e-80 302.0 182 72.5
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 3.7e-80 302.0 182 72.5
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 3.7e-80 302.0 176 72.7
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 3.7e-80 302.0 175 74.9
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 6.3e-80 301.2 175 74.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 6.3e-80 301.2 179 74.3
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 8.2e-80 300.8 183 72.1
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.1e-79 300.4 175 76.0
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.1e-79 300.4 175 76.0
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.4e-79 300.1 175 76.0
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.4e-79 300.1 175 76.0
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 4.1e-79 298.5 182 73.1
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 5.3e-79 298.1 182 72.0
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 7.0e-79 297.7 179 73.2
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.2e-78 297.0 175 74.3
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.2e-78 297.0 182 70.9
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.2e-78 297.0 175 74.3
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.6e-78 296.6 176 72.2
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 2.7e-78 295.8 182 71.4
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 3.5e-78 295.4 182 70.9
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 4.5e-78 295.0 214 64.5
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 5.9e-78 294.7 175 74.3
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.0e-77 293.9 180 71.7
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-77 293.5 182 70.3
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-77 293.5 182 70.3
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 3.8e-77 292.0 183 73.2
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.8e-77 292.0 168 75.6
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 5.0e-77 291.6 176 74.4
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.5e-76 290.0 180 70.6
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 2.5e-76 289.3 182 71.4
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 2.5e-76 289.3 182 71.4
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 3.2e-76 288.9 182 69.8
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 9.4e-76 287.3 156 80.8
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 8.0e-75 284.3 203 63.5
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.3e-72 276.9 188 68.1
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.8e-72 275.8 224 57.6
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.7e-72 275.4 224 57.1
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 6.3e-72 274.6 151 80.8
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.4e-71 272.7 149 81.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 7.0e-71 271.2 151 76.2
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 9.1e-71 270.8 158 75.3
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.0e-70 269.6 161 74.5
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 2.0e-70 269.6 179 70.9
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.5e-70 268.5 182 68.1
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.0e-69 267.3 182 65.9
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.7e-69 266.5 162 74.1
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 5.0e-69 265.0 171 71.3
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 8.5e-69 264.2 176 67.0
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 4.7e-67 258.5 182 64.3
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.0e-66 257.3 156 71.2
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.4e-66 256.9 175 67.4
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.4e-66 256.9 175 67.4
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 5.2e-66 255.0 146 78.1
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.5e-65 253.4 183 65.0
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 7.5e-65 251.1 157 68.8
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 1.7e-64 250.0 187 63.6
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.7e-64 248.8 279 49.1
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.2e-62 243.8 205 57.1
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 5.9e-62 241.5 170 67.1
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.9e-60 236.5 145 70.3
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 6.1e-59 231.5 182 60.4
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.4e-58 230.3 138 71.7
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.8e-55 219.9 193 58.5
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.7e-53 213.4 180 50.6
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 5.0e-53 211.8 182 56.6
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-50 203.4 117 75.2
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 4.9e-48 195.3 176 51.1
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.4e-47 193.7 196 51.5
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.6e-46 190.3 171 46.8
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.6e-46 190.3 171 46.8
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.3e-45 187.2 188 46.8
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 6.2e-43 178.3 91 83.5
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.4e-42 177.2 179 54.2
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.4e-39 167.2 200 38.0
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.1e-39 165.6 87 81.6
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 9.2e-39 164.5 118 62.7
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 3.0e-37 159.5 177 39.0
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.5e-36 156.4 178 38.8
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.7e-35 152.1 140 53.6
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 4.0e-34 149.1 166 41.6
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.6e-33 144.8 146 50.7
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 3.8e-32 142.5 160 44.4
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 5.6e-28 128.6 92 58.7
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 3.6e-27 125.9 90 62.2
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 4.3e-12 75.9 44 77.3
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 7.4e-12 75.1 46 65.2
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 2.4e-07 60.1 43 62.8


User provided reference genes

Program Settings