Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 3.6e-255 884.4 443 100.0
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 7.8e-101 371.7 451 49.9
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 8.1e-82 308.5 452 47.6
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 6.7e-68 262.3 468 38.2
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 9.7e-67 258.5 473 38.1
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.8e-65 254.2 327 48.0
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.2e-64 251.5 446 38.3
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.9e-63 246.9 458 38.0
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.8e-63 246.5 480 36.5
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 4.6e-61 239.6 475 37.3
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.9e-60 236.5 457 38.7
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 5.1e-60 236.1 456 37.3
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 6.7e-60 235.7 472 36.7
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 8.8e-60 235.3 464 37.9
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.5e-59 234.6 471 37.6
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 3.3e-59 233.4 467 35.8
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 4.3e-59 233.0 458 36.2
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 9.7e-59 231.9 468 38.2
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 2.2e-58 230.7 459 35.7
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 4.8e-58 229.6 465 35.3
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 8.2e-58 228.8 463 35.4
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 1.4e-57 228.0 438 36.3
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 6.9e-57 225.7 481 36.6
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 9.1e-57 225.3 461 36.0
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.0e-56 224.2 447 36.5
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 4.5e-56 223.0 456 35.3
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 6.5e-55 219.2 452 35.6
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.2e-54 216.9 459 36.8
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.7e-53 213.8 443 36.6
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 4.7e-53 213.0 461 34.9
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 6.1e-53 212.6 458 36.7
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 6.1e-53 212.6 454 35.5
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 6.1e-53 212.6 463 36.3
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.3e-51 206.8 471 36.9
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 9.7e-51 205.3 462 35.9
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 9.7e-51 205.3 456 34.2
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 2.2e-50 204.1 463 36.3
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.7e-50 203.4 465 35.1
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.4e-49 200.7 494 32.2
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 4.1e-49 199.9 452 35.0
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 4.1e-49 199.9 469 35.8
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 4.1e-49 199.9 459 32.9
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 9.1e-49 198.7 454 33.9
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.5e-48 198.0 457 35.2
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 7.7e-48 195.7 455 33.4
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.3e-47 194.9 465 34.8
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.7e-47 194.5 446 33.6
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.7e-47 194.5 462 35.3
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 2.9e-47 193.7 485 31.5
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 2.9e-47 193.7 485 34.0
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 6.5e-47 192.6 437 36.4
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.1e-46 191.8 445 36.0
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 2.5e-46 190.7 454 33.5
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 3.2e-46 190.3 440 35.9
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 3.2e-46 190.3 443 35.9
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 5.5e-46 189.5 447 33.1
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.1e-45 187.6 456 35.1
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.6e-45 186.8 452 32.3
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 4.7e-45 186.4 508 33.1
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.0e-44 185.3 448 35.9
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.4e-44 184.9 470 33.0
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.3e-44 184.1 367 36.2
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 4.0e-44 183.3 465 31.8
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 5.2e-44 183.0 373 35.1
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.8e-44 182.2 453 32.9
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 8.8e-44 182.2 448 35.7
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 8.8e-44 182.2 428 35.5
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.5e-43 181.4 450 33.8
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.6e-43 180.6 480 34.2
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 7.4e-43 179.1 444 33.8
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 7.4e-43 179.1 445 33.5
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 7.4e-43 179.1 446 35.4
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.3e-42 178.3 457 35.0
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.8e-42 177.2 451 33.0
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 3.7e-42 176.8 453 32.0
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 6.3e-42 176.0 454 35.7
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 6.3e-42 176.0 460 32.0
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.8e-41 174.5 462 33.8
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 2.4e-41 174.1 459 32.0
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.4e-41 174.1 470 31.7
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 5.3e-41 172.9 451 33.0
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.0e-40 171.0 457 31.1
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 3.5e-40 170.2 410 35.4
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 5.9e-40 169.5 442 32.6
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.9e-40 169.5 468 31.4
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.7e-40 169.1 460 32.0
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.7e-39 167.9 445 31.7
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.7e-39 167.9 459 30.9
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 1.7e-39 167.9 452 32.3
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.2e-39 167.5 458 32.3
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 2.9e-39 167.2 458 32.8
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.9e-39 167.2 460 32.2
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.8e-39 166.8 508 30.1
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.8e-39 166.8 462 31.2
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 3.8e-39 166.8 446 32.5
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 6.5e-39 166.0 552 28.3
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 8.5e-39 165.6 439 33.0
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 1.9e-38 164.5 443 31.8
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 3.2e-38 163.7 464 31.7
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.2e-38 163.7 466 32.2
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 1.6e-37 161.4 468 30.8
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.6e-37 161.4 458 32.1
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.1e-37 161.0 446 32.3
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 4.7e-37 159.8 449 31.2
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.4e-36 158.3 454 30.4
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.3e-36 157.5 431 32.9
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 3.0e-36 157.1 474 31.0
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 3.0e-36 157.1 454 31.9
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 8.8e-36 155.6 447 31.5
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.8e-36 155.6 454 31.5
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.2e-35 155.2 404 33.4
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.4e-35 153.3 438 32.2
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.4e-35 153.3 449 29.4
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 5.7e-35 152.9 453 30.9
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 5.7e-35 152.9 450 30.7
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 9.8e-35 152.1 451 30.6
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.3e-34 151.8 455 30.5
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.7e-34 151.4 449 29.4
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.7e-34 151.4 441 30.6
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 3.7e-34 150.2 467 31.7
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.4e-33 148.3 451 30.4
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 3.1e-33 147.1 449 31.2
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.4e-33 146.4 438 30.4
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 7.0e-33 146.0 457 31.3
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 9.1e-33 145.6 454 31.5
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.2e-32 145.2 463 29.2
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.2e-32 145.2 458 30.6
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.6e-32 144.8 453 31.6
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 2.7e-32 144.1 445 30.6
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 3.5e-32 143.7 445 31.0
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.0e-31 142.1 432 30.1
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.3e-31 141.7 445 30.6
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.3e-31 141.7 378 32.3
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 5.0e-31 139.8 454 29.7
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 5.0e-31 139.8 453 30.7
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.5e-31 139.4 453 28.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.1e-30 138.7 453 30.7
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.9e-30 137.9 455 31.0
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.2e-30 137.1 454 30.4
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 4.2e-30 136.7 458 30.1
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 4.2e-30 136.7 460 30.0
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 6.1e-29 132.9 396 31.3
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.4e-28 131.7 235 37.4
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.3e-28 131.0 453 30.5
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 2.0e-27 127.9 386 32.4
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 2.6e-27 127.5 455 30.5
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.4e-27 127.1 310 35.5
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 3.4e-27 127.1 444 29.1
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 4.4e-27 126.7 460 30.4
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 4.4e-27 126.7 460 28.5
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 4.4e-27 126.7 462 28.8
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 4.4e-27 126.7 458 29.0
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 4.4e-27 126.7 456 30.7
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 7.5e-27 125.9 344 33.1
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 9.8e-27 125.6 435 31.0
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.1e-25 122.1 458 27.3
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.0e-25 119.4 411 28.5
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 9.1e-25 119.0 433 28.2
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.2e-24 118.6 294 33.3
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.2e-24 118.6 456 28.7
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.5e-24 117.1 458 27.3
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.4e-20 105.1 406 28.3
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 2.2e-18 97.8 143 46.2
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.7e-18 97.1 297 33.0
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.9e-18 96.7 282 30.5
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 3.5e-16 90.5 345 30.1
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 5.9e-16 89.7 548 26.3
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 2.3e-15 87.8 433 27.0
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 5.0e-15 86.7 454 27.1
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.6e-15 85.9 381 28.3
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.0e-12 79.0 207 31.4
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 4.0e-12 77.0 137 38.0
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 2.6e-11 74.3 99 44.4
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 5.8e-11 73.2 539 25.0
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 9.8e-11 72.4 99 42.4
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 1.3e-10 72.0 99 42.4
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 1.3e-10 72.0 95 43.2
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 1.3e-10 72.0 161 37.3
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.7e-10 70.5 149 36.2
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 7.0e-09 66.2 201 33.3
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 7.0e-09 66.2 202 29.7
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.5e-08 63.9 95 32.6


User provided reference genes

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