Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold305G47994 Striga asiatica HOM05D005144 ORTHO05D006112 4.8e-120 434.5 215 100.0
SGA_v2.0_scaffold96G29029 Striga asiatica HOM05D005144 ORTHO05D006112 6.8e-66 254.6 269 53.5
MSTRG.13890 Avicennia marina HOM05D005144 ORTHO05D006112 3.4e-49 199.1 286 44.1
Migut.A00621 Erythranthe guttata HOM05D005144 ORTHO05D006112 4.1e-47 192.2 277 42.2
SalBow1G0822 Salvia bowleyana HOM05D005144 ORTHO05D006112 2.3e-45 186.4 281 43.1
MSTRG.11913 Avicennia marina HOM05D005144 ORTHO05D006112 8.6e-45 184.5 289 41.2
MSTRG.1800 Avicennia marina HOM05D005144 ORTHO05D006112 1.2e-43 180.6 278 40.3
Dinv37515 Davidia involucrata HOM05D005144 ORTHO05D006112 8.1e-43 177.9 287 40.1
ClCG07G011500 Citrullus lanatus HOM05D005144 ORTHO05D006112 6.8e-42 174.9 197 48.2
CsaV3_4G006720 Cucumis sativus L. HOM05D005144 ORTHO05D006112 1.2e-41 174.1 197 47.2
MELO3C016277.2 Cucumis melo HOM05D005144 ORTHO05D006112 3.4e-41 172.6 197 47.2
Oeu038551.1 Olea europaea HOM05D005144 ORTHO05D006112 4.4e-41 172.2 199 47.2
CSS0010562 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 7.5e-41 171.4 201 46.8
CSS0049427 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 7.5e-41 171.4 201 46.8
Ciclev10021394m.g Citrus clementina HOM05D005144 ORTHO05D006112 9.8e-41 171.0 197 46.2
Cc08_g16260 Coffea canephora HOM05D005144 ORTHO05D006112 9.8e-41 171.0 198 45.5
Haze_09089 Corylus avellana HOM05D005144 ORTHO05D006112 2.2e-40 169.9 197 46.2
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 2.2e-40 169.9 276 38.4
GSVIVG01019559001 Vitis vinifera HOM05D005144 ORTHO05D006112 2.9e-40 169.5 210 44.8
TWI60G1459 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 3.7e-40 169.1 197 44.7
CiPaw.12G081400 Carya illinoinensis HOM05D005144 ORTHO05D006112 4.9e-40 168.7 197 46.2
Actinidia04180 Actinidia chinensis HOM05D005144 ORTHO05D006112 6.4e-40 168.3 287 38.0
TWI15G0686 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 8.3e-40 167.9 223 42.2
Cfa011983 Carpinus fangiana HOM05D005144 ORTHO05D006112 1.1e-39 167.5 197 45.2
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 1.1e-39 167.5 193 45.1
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 1.1e-39 167.5 226 42.9
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 2.4e-39 166.4 224 43.8
QL02p030059 Quercus lobata HOM05D005144 ORTHO05D006112 2.4e-39 166.4 211 43.6
Hund14208 Selenicereus undatus HOM05D005144 ORTHO05D006112 2.4e-39 166.4 230 42.2
Gorai.008G256000 Gossypium raimondii HOM05D005144 ORTHO05D006112 3.2e-39 166.0 197 44.2
Glyma.05G217900 Glycine max HOM05D005144 ORTHO05D006112 4.1e-39 165.6 284 37.0
Atru.chr9.1926 Acer truncatum HOM05D005144 ORTHO05D006112 5.4e-39 165.2 201 45.8
Migut.E01282 Erythranthe guttata HOM05D005144 ORTHO05D006112 5.4e-39 165.2 218 43.1
Nitab4.5_0008496g0030 Nicotiana tabacum HOM05D005144 ORTHO05D006112 5.4e-39 165.2 263 39.9
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 7.1e-39 164.9 208 43.3
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 7.1e-39 164.9 204 44.6
Eucgr.E00882 Eucalyptus grandis HOM05D005144 ORTHO05D006112 9.2e-39 164.5 197 44.2
Gohir.D12G238900 Gossypium hirsutum HOM05D005144 ORTHO05D006112 9.2e-39 164.5 197 43.7
Sed0013108 Sechium edule HOM05D005144 ORTHO05D006112 9.2e-39 164.5 201 44.8
Thecc.03G300600 Theobroma cacao HOM05D005144 ORTHO05D006112 9.2e-39 164.5 199 44.7
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 1.2e-38 164.1 283 37.5
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 1.2e-38 164.1 204 45.1
CiPaw.11G119100 Carya illinoinensis HOM05D005144 ORTHO05D006112 1.6e-38 163.7 191 46.1
Glyma.08G024000 Glycine max HOM05D005144 ORTHO05D006112 1.6e-38 163.7 270 39.3
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 1.6e-38 163.7 197 44.7
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 1.6e-38 163.7 209 44.5
Gohir.A12G237800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.7e-38 162.9 197 43.7
AL6G45020 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 3.5e-38 162.5 217 41.9
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 3.5e-38 162.5 224 42.9
Nitab4.5_0000798g0100 Nicotiana tabacum HOM05D005144 ORTHO05D006112 3.5e-38 162.5 265 39.6
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 3.5e-38 162.5 197 45.7
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 4.6e-38 162.2 206 43.2
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 4.6e-38 162.2 206 43.2
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 4.6e-38 162.2 274 38.0
AT4G10925 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 6.0e-38 161.8 195 44.6
Carub.0006s2967 Capsella rubella HOM05D005144 ORTHO05D006112 7.8e-38 161.4 195 44.1
CARHR255680 Cardamine hirsuta HOM05D005144 ORTHO05D006112 7.8e-38 161.4 195 44.6
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 7.8e-38 161.4 208 42.8
Duzib084G0361 Durio zibethinus HOM05D005144 ORTHO05D006112 1.0e-37 161.0 197 44.2
Potri.001G089600 Populus trichocarpa HOM05D005144 ORTHO05D006112 1.0e-37 161.0 214 43.9
vmacro13890 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 1.3e-37 160.6 199 43.2
Hma1.2p1_0440F.1_g153460 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 1.7e-37 160.2 201 44.8
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 1.7e-37 160.2 211 44.1
THA.LOC104815124 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 1.7e-37 160.2 233 41.2
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 2.3e-37 159.8 202 44.6
EL10Ac5g12937 Beta vulgaris HOM05D005144 ORTHO05D006112 3.0e-37 159.5 198 44.4
Hma1.2p1_0359F.1_g135130 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 3.0e-37 159.5 202 45.0
BcaB01g01559 Brassica carinata HOM05D005144 ORTHO05D006112 3.9e-37 159.1 197 43.1
Thhalv10028928m.g Eutrema salsugineum HOM05D005144 ORTHO05D006112 3.9e-37 159.1 197 43.7
AUR62010862 Chenopodium quinoa HOM05D005144 ORTHO05D006112 5.1e-37 158.7 198 44.4
Aa31LG9G11190 Aethionema arabicum HOM05D005144 ORTHO05D006112 6.6e-37 158.3 197 43.7
BcaC04g21088 Brassica carinata HOM05D005144 ORTHO05D006112 8.6e-37 157.9 197 42.6
C09p35830 Brassica napus HOM05D005144 ORTHO05D006112 8.6e-37 157.9 197 42.6
BolC9t56417H Brassica oleracea HOM05D005144 ORTHO05D006112 8.6e-37 157.9 197 42.6
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 8.6e-37 157.9 275 37.1
Duzib068G1441 Durio zibethinus HOM05D005144 ORTHO05D006112 1.1e-36 157.5 213 40.8
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 1.1e-36 157.5 193 44.0
Sp6g06570 Schrenkiella parvula HOM05D005144 ORTHO05D006112 1.5e-36 157.1 197 43.1
Lalb_Chr05g0224021 Lupinus albus HOM05D005144 ORTHO05D006112 1.9e-36 156.8 193 43.0
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 1.9e-36 156.8 196 44.4
Rhsim07G0081500 Rhododendron simsii HOM05D005144 ORTHO05D006112 1.9e-36 156.8 205 42.0
A09p28270 Brassica napus HOM05D005144 ORTHO05D006112 2.5e-36 156.4 197 42.1
BraA09t38396Z Brassica rapa HOM05D005144 ORTHO05D006112 2.5e-36 156.4 197 42.1
Gohir.A02G099500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 3.3e-36 156.0 197 43.1
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 3.3e-36 156.0 193 45.1
Gorai.003G078400 Gossypium raimondii HOM05D005144 ORTHO05D006112 5.6e-36 155.2 197 42.6
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 7.3e-36 154.8 208 43.3
PGR042G3213 Punica granatum HOM05D005144 ORTHO05D006112 9.5e-36 154.5 224 42.0
DCAR_006524 Daucus carota HOM05D005144 ORTHO05D006112 1.2e-35 154.1 203 42.4
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 1.2e-35 154.1 196 43.9
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 1.2e-35 154.1 208 43.3
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 2.1e-35 153.3 231 41.1
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.8e-35 152.9 208 43.3
THA.LOC104813044 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 8.1e-35 151.4 190 43.2
CAN.G567.13 Capsicum annuum HOM05D005144 ORTHO05D006112 1.4e-34 150.6 209 41.1
Gohir.D03G084200 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.3e-34 149.8 197 41.6
Prupe.5G122700 Prunus persica HOM05D005144 ORTHO05D006112 2.3e-34 149.8 267 37.5
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 3.1e-34 149.4 198 40.4
vmacro11343 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 5.2e-34 148.7 249 38.2
Sabra03G0102000 Salix brachista HOM05D005144 ORTHO05D006112 6.8e-34 148.3 210 41.4
Solyc08g082560.3 Solanum lycopersicum HOM05D005144 ORTHO05D006112 6.8e-34 148.3 282 35.5
Sopen08g030810 Solanum pennellii HOM05D005144 ORTHO05D006112 6.8e-34 148.3 282 35.5
CDE10G0687 Ceratophyllum demersum HOM05D005144 ORTHO05D006112 8.9e-34 147.9 241 37.3
Gorai.006G207000 Gossypium raimondii HOM05D005144 ORTHO05D006112 4.4e-33 145.6 215 39.5
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 7.6e-33 144.8 199 43.7
Gohir.D09G184500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 9.9e-33 144.4 215 39.1
Lsat_1_v5_gn_6_8420 Lactuca sativa HOM05D005144 ORTHO05D006112 9.9e-33 144.4 260 35.0
Gohir.A09G189800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 1.3e-32 144.1 215 39.1
PSO135G1020 Papaver somniferum HOM05D005144 ORTHO05D006112 1.3e-32 144.1 210 40.5
PSO384G2099 Papaver somniferum HOM05D005144 ORTHO05D006112 1.7e-32 143.7 207 40.6
Actinidia22174 Actinidia chinensis HOM05D005144 ORTHO05D006112 2.9e-32 142.9 269 37.5
SGA_v2.0_scaffold111G31399 Striga asiatica HOM05D005144 ORTHO05D006112 4.9e-32 142.1 221 39.8
HPP92_003882 Vanilla planifolia HOM05D005144 ORTHO05D006112 6.4e-32 141.7 200 42.5
Aqoxy5G04282 Aquilegia oxysepala HOM05D005144 ORTHO05D006112 1.4e-31 140.6 194 40.7
ECA246G4745 Erigeron canadensis HOM05D005144 ORTHO05D006112 1.4e-31 140.6 199 40.7
HanXRQChr17g0534951 Helianthus annuus HOM05D005144 ORTHO05D006112 1.4e-31 140.6 274 35.0
unitig_37.g12128 Utricularia gibba HOM05D000074 ORTHO05D007406 2.4e-31 139.8 215 40.9
COL.COLO4_10724 Corchorus olitorius HOM05D005144 ORTHO05D006112 3.2e-31 139.4 141 51.1
Lj2C163G16 Lonicera japonica HOM05D005144 ORTHO05D006112 3.2e-31 139.4 185 42.2
ATR0602G269 Amborella trichopoda HOM05D005144 ORTHO05D006112 5.4e-31 138.7 208 40.4
SalBow8G5178 Salvia bowleyana HOM05D005144 ORTHO05D006112 2.1e-30 136.7 346 29.8
Os01g0550200 Oryza sativa ssp. japonica HOM05D005144 ORTHO05D006112 7.8e-30 134.8 191 40.8
CDE10G0592 Ceratophyllum demersum HOM05D005144 ORTHO05D006112 1.7e-29 133.7 245 34.3
Zm00001eb356530 Zea mays HOM05D005144 ORTHO05D006112 4.3e-28 129.0 191 39.8
Oeu028702.2 Olea europaea HOM05D005144 ORTHO05D006112 2.1e-27 126.7 83 65.1
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 2.4e-26 123.2 190 33.7
CBR_g48131 Chara braunii HOM05D005144 ORTHO05D006112 3.1e-26 122.9 189 38.1
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 2.0e-25 120.2 260 30.4
Zm00001eb162420 Zea mays HOM05D005144 ORTHO05D006112 1.7e-24 117.1 231 35.9
SEGI_08848 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 3.2e-23 112.8 188 34.0
Carub.0007s1712 Capsella rubella HOM05D005144 ORTHO05D006112 6.0e-22 108.6 194 35.6
Peaxi162Scf00074g00636 Petunia axillaris HOM05D005144 ORTHO05D006112 1.0e-21 107.8 166 39.2
Oeu055032.1 Olea europaea HOM05D005144 ORTHO05D006112 2.3e-21 106.7 153 45.1
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 2.3e-21 106.7 193 31.6
CARHR125070 Cardamine hirsuta HOM05D005144 ORTHO05D006112 6.6e-21 105.1 192 32.3
Nn1g00256 Nelumbo nucifera HOM05D005144 ORTHO05D006112 1.1e-20 104.4 80 58.8
AT4G23960 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 4.3e-20 102.4 191 36.6
Duzib205G1188 Durio zibethinus HOM05D005144 ORTHO05D006112 2.1e-19 100.1 197 34.5
Sabra01G0065800 Salix brachista HOM05D005144 ORTHO05D006112 5.3e-18 95.5 77 54.5
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 1.5e-17 94.0 78 51.3
Sabra01G0065900 Salix brachista HOM05D005144 ORTHO05D006112 2.2e-16 90.1 67 68.7
Sc07g0010100 Simmondsia chinensis HOM05D005144 ORTHO05D006112 2.4e-15 86.7 55 74.5
GSVIVG01000309001 Vitis vinifera HOM05D005144 ORTHO05D006112 2.1e-14 83.6 76 59.2
AL7G29350 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 3.6e-11 72.8 77 42.9
VMungo0540G0458 Vigna mungo HOM05D005144 ORTHO05D006112 1.3e-08 64.3 47 63.8
SEGI_40833 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 8.4e-08 61.6 60 40.0


User provided reference genes

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