Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 3.9e-142 508.1 249 100.0
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.6e-103 379.8 240 77.9
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 7.5e-101 370.9 247 74.9
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 4.0e-94 348.6 240 73.3
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.7e-89 333.2 334 55.4
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 5.0e-89 331.6 241 67.6
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-88 330.1 252 65.1
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 3.3e-88 328.9 236 68.6
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.2e-87 327.0 252 64.7
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.1e-87 324.3 248 63.3
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.1e-87 324.3 249 63.5
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 8.1e-87 324.3 246 66.3
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 8.3e-84 314.3 249 66.3
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.4e-83 313.5 237 66.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.4e-83 313.5 239 63.2
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.2e-83 312.4 240 65.0
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 7.1e-83 311.2 239 64.0
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.6e-82 310.1 243 63.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.1e-82 309.7 226 69.5
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 3.0e-81 305.8 239 62.8
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.0e-81 305.8 251 60.2
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 6.6e-81 304.7 241 62.7
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.3e-80 302.4 235 63.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 4.3e-80 302.0 235 63.4
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 5.6e-80 301.6 240 64.6
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 7.3e-80 301.2 239 61.1
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 9.5e-80 300.8 254 59.4
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 9.5e-80 300.8 254 59.4
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 9.5e-80 300.8 252 60.3
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.6e-79 300.1 240 64.2
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.8e-79 299.3 246 61.4
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.6e-79 298.9 224 67.9
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.6e-79 298.9 241 62.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.7e-79 298.5 252 59.9
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.7e-79 298.5 239 62.8
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 4.7e-79 298.5 243 62.1
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 6.2e-79 298.1 239 64.4
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.1e-79 297.7 239 62.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 8.1e-79 297.7 240 62.1
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.4e-78 297.0 253 58.5
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.4e-78 296.2 240 61.2
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.4e-78 296.2 239 61.9
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 3.1e-78 295.8 235 63.0
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 4.0e-78 295.4 239 61.5
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.2e-78 295.0 247 61.5
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.8e-78 294.7 242 60.3
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 6.8e-78 294.7 237 62.9
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-77 293.9 243 58.8
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.2e-77 293.9 242 60.7
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.5e-77 293.5 245 59.2
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.5e-77 293.5 237 61.6
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.0e-77 293.1 246 61.4
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.6e-77 292.7 255 58.8
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 2.6e-77 292.7 246 60.2
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.4e-77 292.4 242 61.2
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 5.8e-77 291.6 237 62.0
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.8e-77 291.6 246 61.4
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 5.8e-77 291.6 243 59.3
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.6e-77 291.2 239 61.9
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.3e-76 290.4 250 58.0
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.2e-76 289.7 249 61.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.2e-76 289.7 249 61.0
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 2.2e-76 289.7 235 61.3
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 2.9e-76 289.3 242 60.3
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 2.9e-76 289.3 242 60.3
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.9e-76 289.3 189 73.5
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.9e-76 289.3 196 70.9
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 3.8e-76 288.9 242 60.3
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 3.8e-76 288.9 249 59.8
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.8e-76 288.9 246 59.8
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 3.8e-76 288.9 235 60.9
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 4.9e-76 288.5 235 60.9
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.9e-76 288.5 252 59.5
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 6.4e-76 288.1 179 77.7
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 8.4e-76 287.7 222 64.0
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 8.4e-76 287.7 245 58.8
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-75 287.3 244 58.6
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.1e-75 287.3 251 61.0
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.4e-75 286.2 267 56.9
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 4.1e-75 285.4 239 59.4
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 5.4e-75 285.0 237 59.5
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.2e-74 283.9 235 61.3
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.2e-74 283.9 190 75.3
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.1e-74 283.1 247 59.9
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 2.1e-74 283.1 239 59.8
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.1e-74 283.1 243 58.4
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 6.0e-74 281.6 267 56.2
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 6.0e-74 281.6 182 72.0
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.0e-74 281.6 222 64.0
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 7.8e-74 281.2 243 59.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 7.8e-74 281.2 243 59.7
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 7.8e-74 281.2 255 57.3
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.0e-73 280.8 182 72.0
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.7e-73 280.0 277 57.0
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.9e-73 278.9 249 58.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.1e-72 277.3 271 54.6
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.9e-72 276.6 242 58.3
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.9e-72 276.6 229 61.6
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 4.3e-72 275.4 255 55.7
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 5.6e-72 275.0 184 71.7
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.2e-71 273.9 179 71.5
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.6e-71 273.5 236 58.5
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.1e-71 273.1 183 70.5
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 3.6e-71 272.3 270 54.4
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.6e-71 272.3 265 54.3
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.1e-70 270.8 182 70.9
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 2.4e-70 269.6 246 58.9
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 6.9e-70 268.1 255 56.1
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.2e-69 267.3 239 58.6
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-69 266.9 181 69.1
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.0e-69 266.5 197 65.0
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.6e-69 266.2 186 67.2
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 3.4e-69 265.8 190 70.0
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 3.4e-69 265.8 190 70.0
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 4.4e-69 265.4 264 54.5
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 4.4e-69 265.4 185 68.1
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.8e-69 265.0 181 69.1
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 7.6e-69 264.6 235 57.4
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.3e-68 263.8 185 70.3
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.7e-68 263.5 190 67.9
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.7e-68 263.5 184 69.0
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.2e-68 263.1 241 56.8
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 2.2e-68 263.1 182 67.6
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 8.4e-68 261.2 234 58.1
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 8.4e-68 261.2 182 67.0
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 8.4e-68 261.2 238 53.8
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.1e-67 260.8 182 68.1
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 9.3e-67 257.7 248 54.0
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 6.0e-66 255.0 189 69.3
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.0e-65 254.2 164 74.4
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 3.9e-65 252.3 226 58.4
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 5.1e-65 251.9 191 62.3
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.1e-64 250.8 174 67.2
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.6e-63 246.9 240 51.2
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.6e-63 246.9 182 64.8
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.4e-62 243.8 162 71.6
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 2.4e-62 243.0 172 70.3
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 3.1e-62 242.7 237 53.2
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.2e-61 240.7 137 85.4
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 3.0e-57 226.1 127 80.3
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 2.1e-55 219.9 236 51.3
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.1e-55 218.0 132 71.2
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.0e-54 215.7 142 71.1
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 9.0e-54 214.5 185 58.9
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.8e-49 200.3 211 51.7
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.8e-49 200.3 211 51.7
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.7e-49 198.4 134 70.1
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.2e-45 187.6 169 57.4
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.6e-45 186.4 125 70.4
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.7e-42 176.4 184 49.5
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.5e-37 160.6 231 42.0
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 5.3e-30 135.6 116 54.3
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 5.1e-25 119.0 171 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 5.3e-22 109.0 101 55.4
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.5e-19 100.1 72 63.9
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 2.1e-18 97.1 204 31.9
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 6.3e-15 85.5 77 51.9
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 5.3e-14 82.4 109 45.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.1e-11 74.7 48 56.2


User provided reference genes

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