Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 8.4e-51 203.4 101 100.0
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 4.2e-18 94.7 104 53.8
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 7.9e-17 90.5 112 47.3
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 1.0e-16 90.1 104 53.8
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 1.4e-16 89.7 111 51.4
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.6e-15 85.5 101 44.6
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 4.4e-15 84.7 101 44.6
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 4.4e-15 84.7 101 44.6
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 7.4e-15 84.0 93 50.5
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 7.4e-15 84.0 93 50.5
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 1.1e-13 80.1 103 44.7
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 4.1e-13 78.2 107 43.9
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 5.3e-13 77.8 106 44.3
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 7.0e-13 77.4 114 44.7
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.2e-12 76.6 95 44.2
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.6e-12 76.3 99 43.4
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.9e-12 74.3 111 42.3
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.9e-12 74.3 112 43.8
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 7.7e-12 73.9 95 45.3
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 7.7e-12 73.9 111 44.1
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 7.7e-12 73.9 108 44.4
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 7.7e-12 73.9 100 45.0
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.9e-11 72.0 111 42.3
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.9e-11 72.0 100 45.0
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 3.8e-11 71.6 103 43.7
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 3.8e-11 71.6 110 40.9
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 8.5e-11 70.5 104 45.2
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 1.1e-10 70.1 114 43.0
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.1e-10 70.1 100 43.0
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.5e-10 69.7 109 43.1
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.5e-10 69.7 99 46.5
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.5e-10 68.9 99 42.4
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 3.2e-10 68.6 108 45.4
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.2e-10 68.2 101 45.5
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 4.2e-10 68.2 96 41.7
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 7.2e-10 67.4 101 42.6
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 7.2e-10 67.4 105 44.8
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 7.2e-10 67.4 65 56.9
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 7.2e-10 67.4 99 41.4
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 9.4e-10 67.0 112 35.7
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 1.2e-09 66.6 105 43.8
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 2.1e-09 65.9 110 41.8
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 2.1e-09 65.9 101 42.6
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 2.7e-09 65.5 112 37.5
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 2.7e-09 65.5 123 36.6
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 3.6e-09 65.1 101 39.6
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 3.6e-09 65.1 105 40.0
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 4.7e-09 64.7 108 37.0
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 4.7e-09 64.7 98 44.9
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 6.1e-09 64.3 114 38.6
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 6.1e-09 64.3 96 47.9
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 8.0e-09 63.9 110 39.1
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 8.0e-09 63.9 112 33.0
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.0e-08 63.5 106 43.4
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.4e-08 63.2 107 43.0
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 1.8e-08 62.8 106 44.3
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 2.3e-08 62.4 106 42.5
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 4.0e-08 61.6 109 37.6
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 6.7e-08 60.8 107 38.3
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 6.7e-08 60.8 121 33.9
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 8.8e-08 60.5 94 40.4
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.5e-07 59.7 97 41.2
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.5e-07 59.7 97 41.2
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 1.5e-07 59.7 102 36.3
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 2.0e-07 59.3 75 49.3
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 2.0e-07 59.3 72 44.4
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 2.6e-07 58.9 103 41.7
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 3.3e-07 58.5 111 33.3
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 4.4e-07 58.2 103 38.8
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 5.7e-07 57.8 106 39.6
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 9.7e-07 57.0 100 37.0
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.3e-06 56.6 102 39.2
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.3e-06 56.6 102 39.2
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 1.3e-06 56.6 102 39.2
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 1.3e-06 56.6 115 38.3
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 1.7e-06 56.2 110 35.5
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 2.2e-06 55.8 101 35.6
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 2.2e-06 55.8 133 35.3
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.7e-06 55.1 99 39.4
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 3.7e-06 55.1 67 43.3
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 6.3e-06 54.3 75 41.3
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 8.2e-06 53.9 104 34.6
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 8.2e-06 53.9 94 38.3
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 8.2e-06 53.9 94 39.4


User provided reference genes

Program Settings