Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 0.0e+00 1098.6 536 100.0
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 2.5e-210 735.7 489 73.6
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.7e-206 723.0 490 72.0
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.2e-204 716.8 490 71.8
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.7e-195 686.4 492 67.5
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.7e-195 686.4 493 66.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.5e-194 682.6 494 67.8
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 2.5e-194 682.6 491 68.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 6.2e-193 677.9 493 66.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 6.2e-193 677.9 493 66.5
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 5.2e-192 674.9 493 67.5
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 6.8e-192 674.5 498 66.7
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 8.9e-192 674.1 491 66.8
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.5e-191 673.3 497 67.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 2.0e-191 672.9 494 66.0
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 4.4e-191 671.8 494 65.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 7.6e-191 671.0 502 65.1
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 2.9e-190 669.1 492 65.2
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 4.9e-190 668.3 490 66.3
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.1e-189 667.2 494 65.6
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 7.1e-189 664.5 497 67.0
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 9.2e-189 664.1 491 65.8
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.6e-188 661.8 492 64.6
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 7.8e-188 661.0 493 65.5
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 7.8e-188 661.0 494 65.4
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.3e-187 659.4 494 65.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.6e-187 657.5 488 64.8
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.1e-186 657.1 491 66.2
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.9e-186 656.4 502 64.1
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 2.5e-186 656.0 494 64.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 3.3e-186 655.6 491 66.2
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 4.3e-186 655.2 493 65.3
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 7.3e-186 654.4 491 65.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 4.7e-185 651.7 494 64.0
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 6.2e-185 651.4 491 65.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.4e-184 650.2 507 64.1
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.4e-184 650.2 509 63.3
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.4e-183 645.2 494 64.8
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 5.8e-183 644.8 492 65.2
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 4.9e-182 641.7 494 63.0
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.1e-181 640.6 504 64.7
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-180 636.7 487 64.5
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.1e-180 636.3 494 64.4
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.9e-178 629.8 498 62.7
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.3e-178 629.0 473 64.9
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 3.6e-177 625.5 493 64.1
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 9.0e-176 620.9 478 64.0
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.0e-176 620.9 472 64.4
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.8e-175 618.2 489 62.4
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 7.6e-175 617.8 493 61.9
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.6e-175 617.8 489 62.4
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 9.9e-175 617.5 488 62.7
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-174 617.1 498 61.4
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.9e-174 615.1 498 61.0
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.1e-173 614.0 488 63.9
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.4e-173 612.8 472 64.8
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 7.1e-173 611.3 471 64.1
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 9.3e-173 610.9 494 62.1
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.2e-172 610.5 471 65.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.1e-172 609.8 498 60.6
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 7.9e-172 607.8 493 60.2
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.0e-171 607.4 471 63.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 5.1e-171 605.1 491 61.5
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 5.1e-171 605.1 468 64.1
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 8.7e-171 604.4 468 63.7
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.9e-170 603.2 426 66.7
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.5e-170 602.8 490 61.4
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 7.4e-170 601.3 494 59.9
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 9.6e-170 600.9 468 63.0
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.8e-169 598.6 494 61.9
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 6.2e-169 598.2 425 68.2
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 2.4e-168 596.3 491 60.5
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 3.1e-168 595.9 491 60.5
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.0e-168 595.5 491 60.5
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 9.0e-168 594.3 491 60.3
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 9.0e-168 594.3 475 62.3
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.2e-166 589.7 501 60.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.2e-165 585.9 494 59.7
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 6.7e-163 578.2 506 57.1
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.9e-162 576.6 496 58.1
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.9e-162 576.6 497 58.4
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.5e-162 576.2 495 58.8
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 7.4e-162 574.7 502 57.6
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.3e-161 573.9 495 59.0
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 2.8e-161 572.8 494 57.1
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 3.7e-161 572.4 494 57.9
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.1e-160 569.3 497 57.1
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 4.0e-160 568.9 499 57.3
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 2.6e-159 566.2 499 57.1
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 2.6e-159 566.2 499 57.1
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 3.4e-159 565.8 498 57.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 5.8e-159 565.1 499 56.5
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 7.6e-159 564.7 450 62.7
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.1e-157 560.8 521 57.0
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 3.2e-157 559.3 500 58.2
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 9.3e-157 557.8 495 57.0
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 2.7e-156 556.2 487 57.3
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 3.5e-156 555.8 504 57.7
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 5.1e-155 552.0 416 63.9
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.5e-154 549.7 400 66.8
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.7e-153 545.8 489 56.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 7.6e-151 538.1 561 53.7
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 7.6e-151 538.1 495 56.8
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.1e-149 534.3 509 55.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 7.2e-149 531.6 486 54.3
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 2.1e-148 530.0 492 54.7
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-141 507.3 450 57.6
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.5e-141 506.5 463 55.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.7e-140 503.1 494 54.3
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 6.1e-140 501.9 422 60.7
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 3.3e-138 496.1 371 65.0
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 8.2e-137 491.5 496 49.6
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 8.5e-134 481.5 514 46.7
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.6e-132 476.1 473 49.7
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 6.7e-131 471.9 494 47.8
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-124 449.9 380 58.2
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 6.1e-124 448.7 465 51.0
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 7.0e-120 435.3 520 47.7
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.0e-118 431.4 305 69.2
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.0e-114 417.2 521 43.8
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.5e-106 388.7 495 47.1
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.4e-104 383.6 394 49.5
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 3.1e-104 383.3 363 55.6
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.1e-104 382.9 394 49.2
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.9e-103 379.0 309 61.5
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 6.1e-100 369.0 309 59.5
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.3e-93 346.7 408 43.4
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 9.5e-93 345.1 229 71.2
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.0e-91 339.7 444 45.5
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.7e-79 300.4 450 38.2
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 6.6e-78 295.8 486 36.0
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 9.2e-72 275.4 293 50.2
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.2e-71 275.0 208 64.9
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 6.7e-54 216.1 190 57.4
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 5.1e-46 189.9 220 47.3
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.1e-45 188.7 281 42.7
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.8e-38 164.9 136 60.3
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.8e-38 164.9 245 37.1
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 5.1e-38 163.3 231 39.8
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.2e-36 156.0 207 46.4
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-34 152.1 205 46.3
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.6e-34 151.0 113 64.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 3.8e-33 147.1 108 67.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.4e-32 145.2 230 39.1
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.1e-29 135.6 170 46.5
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.3e-22 111.3 205 39.0
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 9.7e-21 105.9 62 74.2
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.3e-20 103.2 89 59.6
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 8.2e-20 102.8 107 49.5
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.2e-17 94.7 75 58.7
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.4e-14 85.5 62 59.7
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.3e-11 73.6 78 48.7
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 7.7e-10 69.7 61 60.7
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 8.5e-09 66.2 74 51.4
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.3e-06 58.2 31 77.4


User provided reference genes

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