Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 8.5e-111 403.7 203 100.0
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 5.1e-63 245.0 209 65.6
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.6e-56 223.4 212 60.8
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.6e-56 223.4 212 60.8
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 2.1e-56 223.0 211 58.8
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 3.9e-55 218.8 201 61.2
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.8e-52 209.9 203 62.1
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 5.3e-52 208.4 191 63.4
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 7.6e-51 204.5 176 64.8
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 2.2e-50 203.0 197 57.9
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 2.9e-50 202.6 197 62.4
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 6.4e-50 201.4 180 62.8
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 6.4e-50 201.4 198 58.1
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 6.4e-50 201.4 143 72.7
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 8.4e-50 201.1 145 72.4
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 8.4e-50 201.1 183 61.7
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 1.9e-49 199.9 145 71.7
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 2.4e-49 199.5 138 76.1
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 2.4e-49 199.5 158 69.6
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 3.2e-49 199.1 152 70.4
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 4.2e-49 198.7 206 56.3
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 5.4e-49 198.4 192 60.9
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 7.1e-49 198.0 200 56.0
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 9.3e-49 197.6 149 71.1
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.6e-48 196.8 149 70.5
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 2.1e-48 196.4 163 65.0
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.1e-48 196.4 206 57.3
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 2.7e-48 196.1 183 62.3
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 2.7e-48 196.1 149 70.5
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 3.5e-48 195.7 192 61.5
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 4.6e-48 195.3 160 66.2
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 6.0e-48 194.9 149 69.1
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 7.9e-48 194.5 145 73.1
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 1.0e-47 194.1 152 66.4
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 1.0e-47 194.1 156 66.0
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 1.3e-47 193.7 174 64.4
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 1.3e-47 193.7 204 56.9
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 1.7e-47 193.4 146 70.5
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 2.3e-47 193.0 193 60.6
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.0e-47 192.6 202 55.9
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 3.0e-47 192.6 206 54.9
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 3.9e-47 192.2 147 70.7
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 3.9e-47 192.2 142 71.8
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 5.1e-47 191.8 194 56.2
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.7e-47 191.0 203 55.7
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 1.1e-46 190.7 146 68.5
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.5e-46 190.3 154 66.9
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 1.5e-46 190.3 202 55.9
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 1.9e-46 189.9 201 53.2
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.9e-46 189.9 146 70.5
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 2.5e-46 189.5 175 58.9
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.5e-46 189.5 203 56.2
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 3.3e-46 189.1 131 76.3
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 4.3e-46 188.7 140 70.7
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 4.3e-46 188.7 198 55.6
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 4.3e-46 188.7 145 67.6
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 4.3e-46 188.7 147 66.7
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 4.3e-46 188.7 136 75.0
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 5.6e-46 188.3 151 66.9
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 5.6e-46 188.3 142 68.3
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 7.3e-46 188.0 176 60.2
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 7.3e-46 188.0 152 65.8
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 7.3e-46 188.0 194 56.7
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 7.3e-46 188.0 202 57.9
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 9.6e-46 187.6 142 70.4
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 9.6e-46 187.6 131 75.6
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 1.3e-45 187.2 125 77.6
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.3e-45 187.2 203 55.7
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.3e-45 187.2 136 74.3
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 2.1e-45 186.4 159 62.9
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 4.8e-45 185.3 146 69.2
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.8e-45 185.3 203 54.7
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 8.1e-45 184.5 139 71.2
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 8.1e-45 184.5 155 67.7
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 8.1e-45 184.5 146 64.4
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 8.1e-45 184.5 178 58.4
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 8.1e-45 184.5 136 70.6
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.4e-44 183.7 166 61.4
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 3.1e-44 182.6 146 67.8
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 3.1e-44 182.6 146 67.8
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 3.1e-44 182.6 146 67.8
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 3.1e-44 182.6 178 60.1
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 5.3e-44 181.8 170 61.2
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 6.9e-44 181.4 142 66.9
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 9.0e-44 181.0 125 74.4
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 1.5e-43 180.3 142 66.2
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 2.6e-43 179.5 143 67.8
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 3.4e-43 179.1 136 66.9
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 4.5e-43 178.7 193 53.9
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 4.5e-43 178.7 171 60.2
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 9.9e-43 177.6 141 67.4
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.7e-42 176.8 182 58.2
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 3.8e-42 175.6 146 67.1
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 3.8e-42 175.6 133 68.4
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.2e-40 170.6 120 72.5
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.2e-40 170.6 120 72.5
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 2.7e-40 169.5 208 53.4
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 1.8e-39 166.8 110 77.3
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.3e-39 166.4 156 55.1
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 3.0e-39 166.0 125 68.0
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 2.8e-37 159.5 141 58.2
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 1.8e-36 156.8 177 52.5
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.4e-33 147.1 209 47.4
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 2.1e-32 143.3 95 76.8
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 7.9e-32 141.4 131 61.8
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 1.3e-29 134.0 106 63.2
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 4.8e-29 132.1 129 62.0
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 6.9e-28 128.3 155 52.3
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 2.0e-27 126.7 131 58.0
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 3.4e-27 125.9 137 56.9
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 7.6e-27 124.8 128 55.5
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.3e-26 124.0 87 74.7
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 1.3e-26 124.0 200 42.5
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.7e-26 123.6 143 54.5
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 2.9e-26 122.9 75 82.7
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.6e-24 117.1 69 82.6
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 1.6e-24 117.1 69 81.2
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 1.6e-24 117.1 69 82.6
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.6e-21 107.1 93 63.4
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 1.4e-17 94.0 61 73.8
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 5.5e-17 92.0 147 43.5
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 1.6e-16 90.5 64 70.3
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 6.7e-15 85.1 60 66.7
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 8.8e-15 84.7 133 43.6
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 5.7e-14 82.0 62 62.9
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.3e-13 80.9 119 45.4
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.3e-10 70.9 104 42.3
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 2.9e-10 69.7 86 50.0
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.1e-09 67.8 114 39.5
Hund07493 Selenicereus undatus HOM05D000089 ORTHO05D000104 7.4e-06 55.1 35 74.3


User provided reference genes

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