Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold304G47939 Striga asiatica HOM05D003834 ORTHO05D004483 6.4e-88 327.4 167 100.0
SGA_v2.0_scaffold456G51916 Striga asiatica HOM05D003834 ORTHO05D004483 2.4e-87 325.5 167 99.4
SGA_v2.0_scaffold456G51921 Striga asiatica HOM05D003834 ORTHO05D004483 3.0e-85 318.5 167 97.6
SGA_v2.0_scaffold168G38536 Striga asiatica HOM05D003834 ORTHO05D004483 8.9e-82 307.0 167 92.8
MSTRG.6988 Avicennia marina HOM05D003834 ORTHO05D004483 4.9e-56 221.5 168 70.2
MSTRG.15783 Avicennia marina HOM05D003834 ORTHO05D004483 4.2e-55 218.4 164 70.7
Migut.M01671 Erythranthe guttata HOM05D003834 ORTHO05D004483 4.2e-55 218.4 165 71.5
Oeu057086.1 Olea europaea HOM05D003834 ORTHO05D004483 7.9e-54 214.2 166 69.9
SalBow8G1137 Salvia bowleyana HOM05D003834 ORTHO05D004483 7.9e-54 214.2 165 69.1
SGA_v2.0_scaffold171G38885 Striga asiatica HOM05D003834 ORTHO05D004483 4.8e-51 204.9 118 84.7
CSS0019206 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 5.3e-50 201.4 154 66.2
Dinv40838 Davidia involucrata HOM05D003834 ORTHO05D004483 5.8e-49 198.0 170 60.6
TAR627G0963 Trochodendron aralioides HOM05D003834 ORTHO05D004483 1.4e-47 193.4 154 64.9
CSS0039625 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 1.9e-47 193.0 170 59.4
QL08p005445 Quercus lobata HOM05D003834 ORTHO05D004483 3.2e-47 192.2 167 62.3
Hma1.2p1_0036F.1_g022680 Hydrangea macrophylla HOM05D003834 ORTHO05D004483 1.2e-46 190.3 144 66.7
Manes.03G138400 Manihot esculenta HOM05D003834 ORTHO05D004483 1.2e-46 190.3 143 67.8
Cfa020225 Carpinus fangiana HOM05D003834 ORTHO05D004483 2.7e-46 189.1 159 64.2
Ciclev10007688m.g Citrus clementina HOM05D003834 ORTHO05D004483 4.6e-46 188.3 166 60.8
CAN.G337.23 Capsicum annuum HOM05D003834 ORTHO05D004483 7.9e-46 187.6 172 58.7
Haze_09794 Corylus avellana HOM05D003834 ORTHO05D004483 7.9e-46 187.6 143 66.4
CiPaw.12G136300 Carya illinoinensis HOM05D003834 ORTHO05D004483 1.8e-45 186.4 165 61.2
Lj8A176T68 Lonicera japonica HOM05D003834 ORTHO05D004483 1.8e-45 186.4 154 63.6
Sabra16G0238600 Salix brachista HOM05D003834 ORTHO05D004483 2.3e-45 186.0 173 58.4
TWI38G0150 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 2.3e-45 186.0 166 60.8
Potri.001G362100 Populus trichocarpa HOM05D003834 ORTHO05D004483 3.9e-45 185.3 143 66.4
Cc05_g14750 Coffea canephora HOM05D003834 ORTHO05D004483 5.1e-45 184.9 166 59.6
Nn1g07452 Nelumbo nucifera HOM05D003834 ORTHO05D004483 8.7e-45 184.1 170 58.2
vmacro11558 Vaccinium macrocarpon HOM05D003834 ORTHO05D004483 8.7e-45 184.1 173 56.1
CANSAT11G2090 Cannabis sativa HOM05D003834 ORTHO05D004483 1.1e-44 183.7 144 65.3
Solyc07g065310.3 Solanum lycopersicum HOM05D003834 ORTHO05D004483 1.1e-44 183.7 166 60.2
Sopen07g033510 Solanum pennellii HOM05D003834 ORTHO05D004483 1.1e-44 183.7 166 60.2
arahy.Tifrunner.gnm1.ann1.C43X3W Arachis hypogaea HOM05D003834 ORTHO05D004483 1.5e-44 183.3 167 59.3
Nitab4.5_0000461g0120 Nicotiana tabacum HOM05D003834 ORTHO05D004483 1.5e-44 183.3 175 56.0
PSO210G2219 Papaver somniferum HOM05D003834 ORTHO05D004483 1.5e-44 183.3 166 59.6
Nitab4.5_0003612g0010 Nicotiana tabacum HOM05D003834 ORTHO05D004483 2.5e-44 182.6 175 55.4
PGSC0003DMG400022184 Solanum tuberosum HOM05D003834 ORTHO05D004483 2.5e-44 182.6 166 60.2
TWI39G0575 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 2.5e-44 182.6 169 58.0
GSVIVG01037786001 Vitis vinifera HOM05D003834 ORTHO05D004483 2.5e-44 182.6 124 74.2
Gohir.D11G287600 Gossypium hirsutum HOM05D003834 ORTHO05D004483 4.3e-44 181.8 172 59.3
Atru.chr2.3629 Acer truncatum HOM05D003834 ORTHO05D004483 7.4e-44 181.0 171 57.3
TAR629G2412 Trochodendron aralioides HOM05D003834 ORTHO05D004483 9.7e-44 180.6 154 61.0
Gorai.007G310900 Gossypium raimondii HOM05D003834 ORTHO05D004483 1.3e-43 180.3 172 58.7
Peaxi162Scf00285g00817 Petunia axillaris HOM05D003834 ORTHO05D004483 1.6e-43 179.9 171 57.3
Actinidia05029 Actinidia chinensis HOM05D003834 ORTHO05D004483 2.2e-43 179.5 137 67.9
Gohir.A11G277200 Gossypium hirsutum HOM05D003834 ORTHO05D004483 2.2e-43 179.5 172 58.7
Cpa.g.sc12.186 Carica papaya HOM05D003834 ORTHO05D004483 2.8e-43 179.1 143 65.7
Duzib170G1101 Durio zibethinus HOM05D003834 ORTHO05D004483 2.8e-43 179.1 154 61.0
PSO302G0051 Papaver somniferum HOM05D003834 ORTHO05D004483 3.7e-43 178.7 166 57.8
Lalb_Chr17g0348801 Lupinus albus HOM05D003834 ORTHO05D004483 3.1e-42 175.6 169 58.6
PSO541G6272 Papaver somniferum HOM05D003834 ORTHO05D004483 3.1e-42 175.6 164 55.5
arahy.Tifrunner.gnm1.ann1.BBM6FL Arachis hypogaea HOM05D003834 ORTHO05D004483 4.1e-42 175.3 158 60.1
Medtr5g094740 Medicago truncatula HOM05D003834 ORTHO05D004483 4.1e-42 175.3 167 59.3
COL.COLO4_09798 Corchorus olitorius HOM05D003834 ORTHO05D004483 5.3e-42 174.9 173 57.2
Aqoxy4G02225 Aquilegia oxysepala HOM05D003834 ORTHO05D004483 6.9e-42 174.5 152 58.6
arahy.Tifrunner.gnm1.ann1.08QZGW Arachis hypogaea HOM05D003834 ORTHO05D004483 6.9e-42 174.5 143 65.0
Lalb_Chr04g0247941 Lupinus albus HOM05D003834 ORTHO05D004483 9.0e-42 174.1 167 58.7
MD03G1188400 Malus domestica HOM05D003834 ORTHO05D004483 1.2e-41 173.7 165 57.0
Glyma.14G015600 Glycine max HOM05D003834 ORTHO05D004483 2.0e-41 172.9 167 60.5
LjContig00272g0006391 Lotus japonicus HOM05D003834 ORTHO05D004483 2.0e-41 172.9 169 58.6
Psat2g008920 Pisum sativum HOM05D003834 ORTHO05D004483 2.0e-41 172.9 168 56.5
Thecc.07G019500 Theobroma cacao HOM05D003834 ORTHO05D004483 2.0e-41 172.9 124 71.8
VMungo0647G1153 Vigna mungo HOM05D003834 ORTHO05D004483 2.0e-41 172.9 166 60.8
MD11G1204000 Malus domestica HOM05D003834 ORTHO05D004483 2.6e-41 172.6 165 57.6
PSO675G1367 Papaver somniferum HOM05D003834 ORTHO05D004483 2.6e-41 172.6 183 51.4
Ca_06377_v3 Cicer arietinum L. HOM05D003834 ORTHO05D004483 3.4e-41 172.2 171 56.1
Nn1g03233 Nelumbo nucifera HOM05D003834 ORTHO05D004483 3.4e-41 172.2 154 59.1
Gohir.D01G073900 Gossypium hirsutum HOM05D003834 ORTHO05D004483 7.6e-41 171.0 167 58.1
ECA236G2134 Erigeron canadensis HOM05D003834 ORTHO05D004483 1.0e-40 170.6 153 60.8
TPR.G14161 Trifolium pratense HOM05D003834 ORTHO05D004483 1.0e-40 170.6 165 58.8
MBI16_g26376_MAGBIO Magnolia biondii HOM05D003834 ORTHO05D004483 2.2e-40 169.5 174 54.0
Gorai.002G097000 Gossypium raimondii HOM05D003834 ORTHO05D004483 2.9e-40 169.1 167 57.5
Sc16g0007940 Simmondsia chinensis HOM05D003834 ORTHO05D004483 2.9e-40 169.1 150 61.3
Gohir.A01G087800 Gossypium hirsutum HOM05D003834 ORTHO05D004483 5.0e-40 168.3 167 57.5
Prupe.4G235000 Prunus persica HOM05D003834 ORTHO05D004483 1.1e-39 167.2 168 54.8
Thhalv10011303m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 1.4e-39 166.8 166 53.0
FAN16G1958 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.4e-39 166.8 165 55.8
FAN21G0517 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.4e-39 166.8 143 62.2
Phvul.008G276000 Phaseolus vulgaris HOM05D003834 ORTHO05D004483 1.9e-39 166.4 167 60.5
Eucgr.F03700 Eucalyptus grandis HOM05D003834 ORTHO05D004483 2.5e-39 166.0 148 61.5
FAN11G3562 Fragaria x ananassa HOM05D003834 ORTHO05D004483 2.5e-39 166.0 165 55.8
FAN25G0041 Fragaria x ananassa HOM05D003834 ORTHO05D004483 2.5e-39 166.0 165 55.8
Ah.04g166460 Amaranthus hybridus HOM05D003834 ORTHO05D004483 4.2e-39 165.2 162 55.6
CDE10G0297 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 4.2e-39 165.2 154 54.5
ATR0712G125 Amborella trichopoda HOM05D003834 ORTHO05D004483 5.5e-39 164.9 151 55.0
FAN25G1232 Fragaria x ananassa HOM05D003834 ORTHO05D004483 9.3e-39 164.1 165 55.2
Lj1A793T50 Lonicera japonica HOM05D003834 ORTHO05D004483 9.3e-39 164.1 170 54.1
RcHm_v2.0_Chr5g0042791 Rosa chinensis HOM05D003834 ORTHO05D004483 1.2e-38 163.7 165 55.8
PGR031G3702 Punica granatum HOM05D003834 ORTHO05D004483 2.1e-38 162.9 165 57.0
AT3G13070 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 2.7e-38 162.5 163 52.8
CsaV3_7G018550 Cucumis sativus L. HOM05D003834 ORTHO05D004483 2.7e-38 162.5 168 56.5
AL3G24810 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 3.6e-38 162.2 163 52.8
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 3.6e-38 162.2 154 53.9
Glyma.02G298200 Glycine max HOM05D003834 ORTHO05D004483 3.6e-38 162.2 168 57.7
THA.LOC104822741 Tarenaya hassleriana HOM05D003834 ORTHO05D004483 6.1e-38 161.4 155 57.4
MELO3C024905.2 Cucumis melo HOM05D003834 ORTHO05D004483 7.9e-38 161.0 168 56.0
Carub.0003s1241 Capsella rubella HOM05D003834 ORTHO05D004483 1.8e-37 159.8 163 52.1
HanXRQChr11g0333951 Helianthus annuus HOM05D003834 ORTHO05D004483 1.8e-37 159.8 108 71.3
Sp1g41540 Schrenkiella parvula HOM05D003834 ORTHO05D004483 2.3e-37 159.5 166 50.0
EL10Ac4g07610 Beta vulgaris HOM05D003834 ORTHO05D004483 3.9e-37 158.7 160 53.1
unitig_85.g27343 Utricularia gibba HOM05D003834 ORTHO05D004483 3.9e-37 158.7 150 60.7
AT1G55930 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 5.1e-37 158.3 152 55.3
Thhalv10020238m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 8.8e-37 157.5 163 52.1
Carub.0001s4454 Capsella rubella HOM05D003834 ORTHO05D004483 1.1e-36 157.1 152 55.3
Aa31LG8G300 Aethionema arabicum HOM05D003834 ORTHO05D004483 1.5e-36 156.8 170 48.8
ClCG09G021080 Citrullus lanatus HOM05D003834 ORTHO05D004483 1.5e-36 156.8 168 54.8
BcaC05g29213 Brassica carinata HOM05D003834 ORTHO05D004483 1.9e-36 156.4 162 52.5
C05p54850 Brassica napus HOM05D003834 ORTHO05D004483 1.9e-36 156.4 162 52.5
BolC5t34156H Brassica oleracea HOM05D003834 ORTHO05D004483 1.9e-36 156.4 162 52.5
BraA05t22447Z Brassica rapa HOM05D003834 ORTHO05D004483 1.9e-36 156.4 162 52.5
DCAR_012909 Daucus carota HOM05D003834 ORTHO05D004483 1.9e-36 156.4 158 51.9
DCAR_012924 Daucus carota HOM05D003834 ORTHO05D004483 1.9e-36 156.4 158 51.9
Gohir.A13G134601 Gossypium hirsutum HOM05D003834 ORTHO05D004483 1.9e-36 156.4 124 68.5
A05p36450 Brassica napus HOM05D003834 ORTHO05D004483 2.5e-36 156.0 162 52.5
AL1G64090 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 4.3e-36 155.2 152 54.6
BcaB06g25489 Brassica carinata HOM05D003834 ORTHO05D004483 7.4e-36 154.5 162 51.9
CARHR087650 Cardamine hirsuta HOM05D003834 ORTHO05D004483 1.3e-35 153.7 163 52.1
AUR62017064 Chenopodium quinoa HOM05D003834 ORTHO05D004483 2.2e-35 152.9 162 52.5
BcaC01g04008 Brassica carinata HOM05D003834 ORTHO05D004483 2.8e-35 152.5 142 55.6
Sp3g11240 Schrenkiella parvula HOM05D003834 ORTHO05D004483 3.7e-35 152.1 163 49.7
Sed0024668 Sechium edule HOM05D003834 ORTHO05D004483 4.8e-35 151.8 166 51.8
AUR62040651 Chenopodium quinoa HOM05D003834 ORTHO05D004483 6.3e-35 151.4 164 51.8
Sed0001420 Sechium edule HOM05D003834 ORTHO05D004483 1.4e-34 150.2 164 54.3
HanXRQChr04g0126521 Helianthus annuus HOM05D003834 ORTHO05D004483 1.8e-34 149.8 109 67.0
A03p38030 Brassica napus HOM05D000121 ORTHO05D004483 2.4e-34 149.4 142 54.9
C03p46120 Brassica napus HOM05D003834 ORTHO05D004483 2.4e-34 149.4 142 54.9
BolC3t16884H Brassica oleracea HOM05D003834 ORTHO05D004483 2.4e-34 149.4 142 54.9
BraA03t12955Z Brassica rapa HOM05D003834 ORTHO05D004483 2.4e-34 149.4 142 54.9
Lsat_1_v5_gn_7_113161 Lactuca sativa HOM05D003834 ORTHO05D004483 3.1e-34 149.1 161 53.4
DCAR_019235 Daucus carota HOM05D003834 ORTHO05D004483 5.3e-34 148.3 141 53.9
Oeu044499.1 Olea europaea HOM05D003834 ORTHO05D004483 3.4e-33 145.6 148 58.8
Actinidia00091 Actinidia chinensis HOM05D003834 ORTHO05D004483 1.7e-32 143.3 123 60.2
AL1G64150 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 2.2e-32 142.9 152 52.6
QL08p006267 Quercus lobata HOM05D003834 ORTHO05D004483 2.7e-30 136.0 97 66.0
Dinv05352 Davidia involucrata HOM05D003834 ORTHO05D004483 4.7e-30 135.2 89 70.8
ECA236G2833 Erigeron canadensis HOM05D003834 ORTHO05D004483 4.7e-30 135.2 145 51.7
AagrBONN_evm.TU.Sc2ySwM_344.3938 Anthoceros agrestis HOM05D003834 ORTHO05D004483 8.8e-29 131.0 115 60.9
SMO367G1292 Selaginella moellendorffii HOM05D003834 ORTHO05D004483 2.0e-28 129.8 109 59.6
Os03g0593200 Oryza sativa ssp. japonica HOM05D003834 ORTHO05D004483 3.3e-28 129.0 151 43.0
Lsat_1_v5_gn_7_95440 Lactuca sativa HOM05D003834 ORTHO05D004483 5.7e-28 128.3 103 59.2
Zm00001eb049810 Zea mays HOM05D003834 ORTHO05D004483 2.2e-27 126.3 127 50.4
FvH4_3g24130 Fragaria vesca HOM05D003834 ORTHO05D004483 5.3e-26 121.7 89 66.3
SEGI_18466 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 5.3e-26 121.7 112 55.4
Pp3c2_3830 Physcomitrium patens HOM05D003834 ORTHO05D004483 9.1e-26 120.9 112 56.2
Pp3c1_38160 Physcomitrium patens HOM05D003834 ORTHO05D004483 1.3e-24 117.1 112 55.4
HPP92_024890 Vanilla planifolia HOM05D003834 ORTHO05D004483 2.9e-24 115.9 147 46.9
Mapoly0112s0016 Marchantia polymorpha HOM05D003834 ORTHO05D004483 1.4e-23 113.6 106 56.6
Pp3c10_7850 Physcomitrium patens HOM05D003834 ORTHO05D004483 3.2e-23 112.5 113 52.2
Lj6g0012228 Lotus japonicus HOM05D003834 ORTHO05D004483 3.6e-22 109.0 89 64.0
Lj6g0000188 Lotus japonicus HOM05D000121 ORTHO05D000102 6.1e-22 108.2 89 64.0
CBR_g22294 Chara braunii HOM05D003834 ORTHO05D004483 2.2e-19 99.8 134 40.3
arahy.Tifrunner.gnm1.ann1.UPI3MA Arachis hypogaea HOM05D003834 ORTHO05D004483 8.8e-13 77.8 113 44.2
CiPaw.11G201400 Carya illinoinensis HOM05D003834 ORTHO05D004483 1.5e-07 60.5 40 77.5
RcHm_v2.0_Chr5g0043091 Rosa chinensis HOM05D003834 ORTHO05D004483 1.2e-06 57.4 28 89.3


User provided reference genes

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