Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 6.0e-164 580.9 315 100.0
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 4.9e-89 332.0 308 66.2
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 6.9e-75 285.0 305 61.0
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 7.8e-71 271.6 318 57.2
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 2.3e-70 270.0 314 56.4
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 3.0e-70 269.6 306 58.2
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.1e-69 267.7 325 55.4
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 9.6e-69 264.6 318 56.0
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.3e-68 264.2 312 55.4
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 2.8e-68 263.1 311 54.7
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.8e-68 263.1 314 55.1
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.8e-68 263.1 304 56.2
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 6.2e-68 261.9 295 56.9
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.4e-67 260.8 299 56.9
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 1.8e-67 260.4 314 55.7
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 3.1e-67 259.6 306 55.6
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.3e-67 258.8 309 54.7
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 6.9e-67 258.5 307 55.7
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 9.0e-67 258.1 306 53.6
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.5e-66 257.3 305 55.7
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 4.5e-66 255.8 319 54.5
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 5.8e-66 255.4 319 54.5
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.3e-65 254.2 315 53.7
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.3e-65 254.2 299 54.8
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 2.9e-65 253.1 306 55.9
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 3.8e-65 252.7 300 56.0
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 4.9e-65 252.3 301 54.2
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.9e-65 252.3 299 55.5
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 4.9e-65 252.3 308 53.9
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 8.4e-65 251.5 298 55.7
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.9e-64 250.4 299 54.8
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.9e-64 250.4 314 53.5
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 4.2e-64 249.2 314 53.2
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 9.3e-64 248.1 301 56.1
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 9.3e-64 248.1 301 55.1
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.3e-64 248.1 305 54.4
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.2e-63 247.7 305 54.4
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.6e-63 247.3 305 54.4
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.7e-63 246.5 301 54.8
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.7e-63 246.5 303 54.1
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 4.6e-63 245.7 301 54.5
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.3e-62 244.2 306 52.6
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.3e-62 244.2 298 53.7
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.8e-62 243.8 307 53.7
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 2.3e-62 243.4 303 51.5
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 8.7e-62 241.5 296 53.0
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.9e-61 240.4 299 53.2
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 5.6e-61 238.8 331 50.2
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 6.2e-60 235.3 302 50.7
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.4e-59 234.2 301 51.2
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.4e-59 234.2 330 48.8
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.4e-59 234.2 299 52.2
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.8e-59 233.8 297 52.5
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.8e-59 233.8 289 52.2
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 1.8e-59 233.8 293 52.9
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 2.4e-59 233.4 295 52.2
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 3.1e-59 233.0 295 52.9
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 6.9e-59 231.9 317 51.4
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 9.0e-59 231.5 295 52.5
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.0e-59 231.5 305 52.5
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.2e-58 231.1 297 51.9
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 2.0e-58 230.3 297 52.5
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 2.0e-58 230.3 300 52.3
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 2.0e-58 230.3 295 52.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.6e-58 229.9 297 51.5
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 3.4e-58 229.6 298 50.0
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 5.8e-58 228.8 295 52.2
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.8e-58 228.8 297 51.2
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 7.6e-58 228.4 306 51.0
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 9.9e-58 228.0 292 51.4
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 9.9e-58 228.0 301 51.5
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.7e-57 227.3 295 51.5
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.2e-57 226.9 299 51.5
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 2.9e-57 226.5 319 51.1
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.9e-57 225.7 297 50.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.9e-56 223.8 302 49.0
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 2.4e-56 223.4 300 51.0
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.4e-56 223.4 277 53.1
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 5.5e-56 222.2 291 51.2
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 9.3e-56 221.5 311 50.8
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.2e-55 221.1 298 50.0
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.2e-55 221.1 293 50.9
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.2e-55 221.1 239 57.7
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.2e-55 221.1 292 51.4
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 3.5e-55 219.5 313 48.2
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 4.6e-55 219.2 208 62.5
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 6.0e-55 218.8 273 54.2
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 1.0e-54 218.0 295 51.2
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.3e-54 217.6 305 49.5
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.3e-54 216.9 292 50.3
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 5.1e-54 215.7 298 51.3
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 6.7e-54 215.3 295 50.5
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.1e-53 214.5 293 50.9
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.1e-53 214.5 298 50.3
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 4.3e-53 212.6 311 48.9
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 7.4e-53 211.8 295 49.5
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.6e-52 210.7 294 49.7
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 2.1e-52 210.3 294 49.3
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.1e-52 210.3 294 49.0
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 2.8e-52 209.9 297 49.2
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 3.7e-52 209.5 311 49.2
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 4.8e-52 209.1 292 49.3
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 3.1e-51 206.5 295 49.5
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 4.0e-51 206.1 292 49.7
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 1.5e-50 204.1 190 64.2
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.0e-50 203.8 195 62.1
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 3.4e-50 203.0 295 49.5
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.7e-49 200.7 300 46.0
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 2.9e-49 199.9 275 50.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.1e-47 193.7 208 60.1
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 4.6e-47 192.6 293 47.1
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.8e-46 190.7 293 46.8
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.2e-44 183.7 349 41.0
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.6e-42 176.8 314 43.9
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.0e-41 174.9 268 49.6
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.9e-37 160.6 298 38.9
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.3e-36 157.9 293 40.6
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 4.5e-34 149.4 109 75.2
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 7.7e-34 148.7 267 42.7
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.0e-33 148.3 211 46.4
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 6.1e-31 139.0 94 76.6
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 7.9e-31 138.7 93 77.4
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 2.0e-29 134.0 321 35.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.8e-28 130.2 292 37.7
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.8e-28 130.2 227 44.5
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 6.3e-28 129.0 247 43.7
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 5.9e-26 122.5 165 52.7
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.2e-23 114.8 243 41.2
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.2e-23 114.8 302 38.1
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.6e-21 107.1 232 40.9
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 8.2e-20 102.1 272 33.5
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 3.1e-19 100.1 65 81.5
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.2e-15 88.2 71 62.0
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 6.1e-15 85.9 165 35.8
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.4e-14 84.7 56 78.6
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 3.0e-14 83.6 55 81.8
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 3.3e-13 80.1 158 41.1
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.3e-12 78.2 272 32.4
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 2.8e-12 77.0 63 63.5
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 3.5e-10 70.1 175 37.1
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.1e-07 59.3 34 76.5
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 1.8e-06 57.8 130 42.3
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 6.8e-06 55.8 81 48.1


User provided reference genes

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