Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 4.1e-212 741.1 370 100.0
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 8.7e-154 547.4 363 76.3
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.3e-152 543.5 378 74.3
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 8.7e-146 520.8 362 71.5
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 8.2e-144 514.2 368 71.7
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.5e-142 510.0 351 74.1
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.0e-142 509.6 303 80.9
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 7.6e-142 507.7 333 75.1
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.0e-141 507.3 366 71.0
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.0e-141 507.3 328 76.2
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 8.4e-141 504.2 356 71.6
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.9e-140 503.1 376 68.6
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 2.5e-140 502.7 374 69.8
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 3.2e-140 502.3 326 74.8
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 5.5e-140 501.5 361 70.1
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.0e-138 497.3 363 71.3
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.5e-137 493.4 376 68.4
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 9.7e-137 490.7 376 66.8
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 9.7e-137 490.7 347 71.5
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.3e-136 490.3 373 66.8
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.6e-136 490.0 304 77.6
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 4.8e-136 488.4 367 67.0
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 4.8e-136 488.4 356 68.5
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.4e-135 486.9 367 67.6
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.4e-135 486.9 362 68.5
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.4e-135 486.1 324 72.8
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 1.2e-134 483.8 305 76.4
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.0e-134 483.0 303 78.2
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 7.7e-134 481.1 321 72.3
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 7.7e-134 481.1 325 73.2
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.7e-133 479.9 381 65.4
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 2.2e-133 479.6 333 73.0
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.4e-132 476.9 370 65.9
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 1.9e-132 476.5 320 72.5
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.9e-132 476.5 379 66.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.5e-132 476.1 310 75.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.2e-132 475.7 306 74.8
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 9.4e-132 474.2 305 74.8
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 2.1e-131 473.0 364 66.8
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 2.1e-131 473.0 308 73.4
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.1e-131 473.0 322 71.7
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 6.1e-131 471.5 330 70.6
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 7.9e-131 471.1 369 64.0
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.8e-130 469.9 291 78.4
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.8e-130 469.9 303 74.6
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 3.0e-130 469.2 322 71.4
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 3.9e-130 468.8 325 68.9
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 8.8e-130 467.6 346 69.1
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.1e-129 467.2 307 73.3
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.1e-129 467.2 351 66.7
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.1e-129 467.2 366 65.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.5e-129 466.1 305 73.4
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.3e-129 465.7 311 73.3
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 4.3e-129 465.3 303 73.9
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.3e-129 465.3 303 74.3
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 5.7e-129 464.9 331 69.2
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 7.4e-129 464.5 355 67.3
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 9.7e-129 464.2 366 65.0
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 9.7e-129 464.2 366 66.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 3.7e-128 462.2 366 65.0
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 4.8e-128 461.8 356 64.6
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 3.1e-127 459.1 364 66.2
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 3.4e-126 455.7 378 64.0
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.7e-125 453.4 430 57.9
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 2.9e-125 452.6 382 62.8
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 3.8e-125 452.2 313 70.9
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.8e-125 452.2 372 63.4
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 6.5e-125 451.4 360 65.8
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 8.5e-125 451.1 366 62.3
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 8.5e-125 451.1 366 62.3
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.4e-124 450.3 338 66.9
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.2e-124 448.7 371 62.3
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.2e-124 448.0 370 62.4
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 7.2e-124 448.0 358 64.2
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 9.4e-124 447.6 301 71.4
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.6e-123 446.8 369 62.3
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.1e-123 446.4 368 65.2
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.7e-123 446.0 382 60.7
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.6e-123 445.7 373 61.7
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.9e-122 442.2 367 61.6
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.1e-122 441.8 330 66.4
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 2.0e-121 439.9 360 63.1
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 4.4e-121 438.7 372 61.0
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.7e-120 435.6 271 77.9
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.7e-120 435.6 271 77.9
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 4.8e-120 435.3 310 69.0
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 6.3e-120 434.9 365 58.4
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.4e-119 433.7 334 64.1
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 7.0e-119 431.4 321 66.4
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.3e-117 427.2 333 64.0
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 5.0e-117 425.2 373 60.9
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.1e-115 419.9 368 62.0
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 5.3e-111 405.2 301 65.8
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 5.5e-108 395.2 336 61.0
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.7e-107 392.1 253 75.1
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 5.5e-100 368.6 285 62.5
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 7.2e-100 368.2 290 63.8
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.8e-98 363.6 351 54.4
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 2.4e-95 353.2 247 69.6
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 2.7e-94 349.7 287 59.9
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.5e-94 349.4 278 64.7
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.9e-92 343.6 300 53.7
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 2.8e-91 339.7 295 54.2
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-90 336.7 300 53.7
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 4.0e-90 335.9 291 52.9
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 8.9e-90 334.7 295 53.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-89 334.0 300 53.3
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.5e-89 334.0 280 62.1
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.6e-89 333.2 298 52.0
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 3.4e-89 332.8 290 54.1
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.7e-89 332.0 299 51.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.7e-88 329.3 300 53.0
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.3e-88 328.2 300 52.3
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 8.3e-88 328.2 300 53.3
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 8.3e-88 328.2 300 52.0
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.8e-87 327.0 299 53.2
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.4e-87 326.6 301 51.8
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 5.4e-87 325.5 292 51.7
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.0e-87 325.1 291 51.5
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 9.2e-87 324.7 218 69.3
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-86 324.3 300 51.3
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.0e-86 323.6 301 52.2
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.7e-86 323.2 301 52.5
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.3e-85 320.1 299 52.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.0e-85 318.9 298 50.3
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 6.6e-85 318.5 299 50.2
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.6e-85 318.5 300 50.3
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 8.6e-85 318.2 301 51.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-84 317.8 300 51.0
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-84 317.8 300 51.0
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-84 317.4 301 51.2
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.9e-84 317.0 301 50.5
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 4.3e-84 315.8 300 50.3
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 5.6e-84 315.5 305 49.2
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-83 313.9 300 51.3
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.4e-82 310.8 297 51.2
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-82 310.1 272 54.0
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-82 309.7 301 49.2
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.2e-81 307.8 295 49.2
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 3.2e-79 299.7 300 48.3
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 3.0e-77 293.1 299 47.8
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.6e-77 291.6 274 50.4
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 2.6e-73 280.0 301 48.5
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.7e-72 277.3 287 48.8
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-71 273.9 280 48.9
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 1.0e-69 268.1 222 63.1
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-68 263.8 349 40.4
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 5.8e-65 252.3 284 50.7
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-64 250.4 245 49.4
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.6e-57 225.3 219 51.1
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 2.7e-54 216.9 191 58.6
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 2.7e-54 216.9 257 46.7
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 4.3e-52 209.5 190 51.6
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 4.3e-52 209.5 190 51.6
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.2e-49 201.4 294 38.4
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.7e-48 197.6 244 46.7
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.7e-40 171.0 128 57.0
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-38 164.9 128 55.5
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-38 164.9 128 55.5
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.8e-35 153.7 296 32.8
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.7e-35 153.3 148 48.6
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 4.9e-32 142.9 111 55.0
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 6.5e-32 142.5 85 78.8
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 6.9e-26 122.5 153 43.8
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 4.5e-25 119.8 94 66.0
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 2.1e-22 110.9 299 29.1
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.6e-14 83.6 57 73.7


User provided reference genes

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