Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.8e-154 549.3 283 100.0
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 7.9e-123 444.1 289 83.7
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 1.7e-117 426.4 288 79.2
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 3.0e-114 415.6 290 76.6
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.6e-113 412.5 280 78.6
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 4.2e-108 395.2 290 73.4
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 5.7e-105 384.8 290 70.3
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.7e-104 382.1 289 69.6
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 4.8e-104 381.7 289 69.6
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.1e-103 380.6 290 67.6
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 4.1e-103 378.6 288 70.5
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 5.3e-103 378.3 289 68.2
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.2e-102 377.1 289 68.5
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 2.0e-102 376.3 278 71.2
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 7.7e-102 374.4 289 68.5
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.7e-101 373.2 278 70.5
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.9e-101 372.5 278 70.1
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 8.5e-101 370.9 288 67.4
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.6e-99 366.7 290 66.6
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.1e-99 366.3 290 65.9
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 6.1e-99 364.8 290 67.9
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 6.1e-99 364.8 284 68.0
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.4e-98 363.6 279 69.9
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 3.0e-98 362.5 286 66.4
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 5.2e-98 361.7 280 67.1
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.8e-98 361.3 292 67.1
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 8.8e-98 360.9 297 66.0
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 2.6e-97 359.4 289 65.4
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.6e-97 359.4 300 64.3
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.6e-97 359.4 286 68.5
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.7e-97 358.2 279 69.9
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 5.7e-97 358.2 279 68.1
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 5.7e-97 358.2 259 71.4
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.7e-96 356.7 279 67.0
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.7e-96 356.7 279 68.8
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.2e-96 356.3 288 65.3
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 4.8e-96 355.1 290 65.5
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.1e-95 354.0 283 66.8
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.8e-95 353.2 285 68.1
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.4e-95 352.8 296 64.9
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 5.4e-95 351.7 279 68.1
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.4e-95 351.7 279 68.1
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 7.0e-95 351.3 288 63.9
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 2.7e-94 349.4 278 66.9
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.9e-94 348.2 291 63.9
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 7.7e-94 347.8 285 65.3
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.0e-93 347.4 279 65.6
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.0e-93 347.4 288 62.5
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.3e-93 346.3 276 65.2
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.3e-93 346.3 273 66.7
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.9e-93 345.9 273 66.7
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.9e-93 345.9 288 62.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.8e-93 345.5 276 65.2
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.8e-93 345.5 288 63.9
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 5.0e-93 345.1 280 64.6
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.1e-92 344.0 288 63.5
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.5e-92 343.6 241 73.4
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.5e-92 343.6 288 63.5
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.5e-92 343.6 288 63.2
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 1.5e-92 343.6 284 65.8
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.9e-92 343.2 290 64.1
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.9e-92 343.2 288 64.2
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.5e-92 342.8 279 65.6
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 4.2e-92 342.0 289 64.4
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 9.5e-92 340.9 282 66.3
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 9.5e-92 340.9 290 63.1
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.2e-91 340.5 288 61.8
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.2e-91 340.5 287 62.0
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.6e-91 340.1 296 62.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 2.1e-91 339.7 287 62.0
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.8e-91 339.3 282 63.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 6.1e-91 338.2 280 64.3
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.0e-90 337.4 279 65.6
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.4e-90 337.0 279 64.5
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.4e-90 337.0 279 64.5
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.4e-90 337.0 279 64.5
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 2.3e-90 336.3 280 66.4
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.3e-90 336.3 232 74.1
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.0e-90 335.9 279 65.6
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 4.0e-90 335.5 287 62.0
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 8.9e-90 334.3 278 64.4
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.0e-89 333.2 284 62.3
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 2.6e-89 332.8 282 63.1
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 4.4e-89 332.0 279 64.2
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 7.5e-89 331.3 278 65.1
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 7.5e-89 331.3 278 65.1
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 7.5e-89 331.3 278 65.1
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.3e-88 330.5 279 65.6
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.3e-88 330.5 228 73.2
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.2e-88 329.7 280 65.0
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.2e-88 329.7 289 62.3
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.8e-88 329.3 279 63.8
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 2.8e-88 329.3 278 64.7
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 4.9e-88 328.6 277 65.0
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.9e-88 328.6 274 65.0
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.8e-87 326.6 228 74.1
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 2.4e-87 326.2 310 57.7
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 3.1e-87 325.9 216 75.5
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.1e-87 325.9 283 61.5
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 4.1e-87 325.5 284 60.9
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.0e-86 323.2 296 59.8
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.5e-86 322.4 274 61.7
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 5.9e-86 321.6 265 64.2
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.9e-84 316.6 245 66.9
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.9e-84 316.6 225 72.9
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.3e-84 315.8 225 72.9
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 4.3e-84 315.5 251 66.1
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 4.0e-82 308.9 279 60.6
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 4.4e-81 305.4 278 62.6
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.4e-79 300.4 239 66.1
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 3.2e-79 299.3 229 67.2
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 3.5e-78 295.8 274 58.8
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.7e-77 293.5 280 58.6
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.3e-77 293.1 238 62.6
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.5e-76 289.7 299 54.2
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 9.5e-76 287.7 228 64.0
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 2.9e-72 276.2 279 56.3
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.2e-70 270.8 292 46.9
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.0e-69 267.7 237 57.4
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 3.3e-68 262.7 217 65.0
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.6e-65 253.1 268 51.9
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.4e-63 246.5 289 46.4
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 5.4e-63 245.4 263 57.0
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-59 233.8 197 53.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.7e-59 232.3 197 53.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-58 230.3 197 52.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.0e-58 229.2 197 52.3
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.8e-54 214.9 230 55.7
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.8e-48 196.1 197 47.7
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.3e-47 191.4 238 50.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-46 191.0 149 64.4
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.3e-45 187.6 261 45.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.0e-45 186.4 251 48.2
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-44 184.5 137 67.9
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.6e-44 182.2 171 57.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.4e-40 168.3 135 65.2
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 6.9e-34 148.7 182 44.5
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.4e-32 142.1 180 40.6
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.1e-30 137.1 197 38.6
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.7e-30 136.7 118 62.7
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.5e-28 130.2 199 43.2
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.2e-27 125.6 192 45.3
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.4e-26 124.4 192 39.6
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.6e-25 120.2 77 76.6
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 2.3e-21 107.1 75 73.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.9e-21 106.3 99 60.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.9e-21 106.3 99 60.6
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 1.5e-20 104.4 192 31.8
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.5e-17 94.4 59 74.6
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.7e-17 92.0 58 72.4
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.0e-16 91.7 57 73.7
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.3e-16 91.3 91 50.5
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.5e-16 89.0 58 70.7
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.9e-14 82.0 64 64.1
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.7e-12 75.1 62 61.3
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 7.7e-09 65.5 43 67.4
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 2.1e-06 57.4 51 58.8
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 2.1e-06 57.4 51 58.8


User provided reference genes

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