Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 7.3e-80 300.4 146 100.0
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 6.2e-71 270.8 192 75.0
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 1.8e-62 242.7 192 67.7
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 4.0e-62 241.5 192 67.2
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 9.0e-62 240.4 192 66.7
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 9.0e-62 240.4 192 67.2
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 2.0e-61 239.2 192 67.2
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 9.9e-61 236.9 192 66.1
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 9.9e-61 236.9 192 66.1
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 6.4e-60 234.2 191 63.4
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 8.4e-60 233.8 192 65.1
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 8.4e-60 233.8 190 64.7
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 1.4e-59 233.0 190 64.7
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 1.4e-59 233.0 192 64.1
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.4e-59 233.0 192 64.1
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.4e-59 233.0 190 64.7
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 3.2e-59 231.9 191 63.4
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 5.4e-59 231.1 190 65.3
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 1.2e-58 229.9 191 62.8
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.2e-58 229.9 190 64.7
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 1.2e-58 229.9 190 64.7
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.6e-58 229.6 191 63.4
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 1.6e-58 229.6 192 64.6
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 1.6e-58 229.6 192 64.6
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 1.6e-58 229.6 192 64.6
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.6e-58 229.6 191 65.4
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 2.1e-58 229.2 191 63.4
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.7e-58 228.8 191 62.8
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.7e-58 228.8 190 63.7
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 3.5e-58 228.4 191 62.3
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 3.5e-58 228.4 190 64.2
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 3.5e-58 228.4 190 64.7
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 4.6e-58 228.0 190 63.2
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 4.6e-58 228.0 190 63.7
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 4.6e-58 228.0 191 62.3
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 6.0e-58 227.6 190 63.7
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 1.0e-57 226.9 190 63.7
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 1.0e-57 226.9 187 63.1
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 1.3e-57 226.5 190 64.7
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 3.0e-57 225.3 190 62.1
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 3.0e-57 225.3 190 63.7
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 3.0e-57 225.3 190 64.2
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 6.7e-57 224.2 190 61.6
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 8.7e-57 223.8 190 61.6
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.1e-56 223.4 188 62.8
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 1.1e-56 223.4 190 63.7
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 1.5e-56 223.0 190 63.7
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 1.5e-56 223.0 190 63.2
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.9e-56 222.6 190 62.1
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 2.5e-56 222.2 192 62.0
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 4.3e-56 221.5 192 63.0
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 4.3e-56 221.5 190 63.2
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 7.4e-56 220.7 190 61.6
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 7.4e-56 220.7 188 61.2
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 7.4e-56 220.7 192 61.5
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 9.6e-56 220.3 190 61.6
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.6e-55 219.5 190 61.6
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 1.6e-55 219.5 192 60.9
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.6e-55 219.5 192 62.0
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 2.1e-55 219.2 190 61.1
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 2.1e-55 219.2 190 61.1
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 2.1e-55 219.2 190 61.1
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 2.1e-55 219.2 195 60.0
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 2.1e-55 219.2 190 61.6
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 2.1e-55 219.2 190 62.1
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 2.8e-55 218.8 190 62.1
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.8e-55 218.8 207 58.9
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 3.7e-55 218.4 188 60.6
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 6.2e-55 217.6 190 62.1
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 1.1e-54 216.9 190 61.1
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 1.4e-54 216.5 190 60.5
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.4e-54 216.5 190 60.5
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.4e-54 215.7 183 62.3
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 4.0e-54 214.9 190 60.5
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 4.0e-54 214.9 216 56.5
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 4.0e-54 214.9 192 60.4
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 2.0e-53 212.6 192 62.0
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 2.0e-53 212.6 190 60.0
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 4.5e-53 211.5 194 58.8
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 5.8e-53 211.1 136 78.7
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 5.8e-53 211.1 190 60.0
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 9.9e-53 210.3 179 63.7
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 9.9e-53 210.3 134 79.1
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 3.8e-52 208.4 230 52.2
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 4.9e-52 208.0 185 59.5
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.1e-51 206.8 190 60.0
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.1e-51 206.8 190 60.0
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 4.2e-51 204.9 132 77.3
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 5.5e-51 204.5 134 75.4
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 9.3e-51 203.8 244 50.8
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 1.2e-50 203.4 177 61.0
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 6.0e-50 201.1 200 56.0
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 1.3e-49 199.9 132 75.0
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.5e-48 196.4 134 74.6
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 4.3e-48 194.9 164 65.2
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 1.3e-47 193.4 137 72.3
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 1.6e-47 193.0 190 55.3
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 3.7e-47 191.8 164 61.0
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 4.8e-47 191.4 192 58.3
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 6.2e-47 191.0 143 67.8
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 6.2e-47 191.0 135 74.1
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.2e-47 190.7 136 73.5
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.2e-45 186.8 134 71.6
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.2e-45 186.8 177 56.5
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 2.0e-45 186.0 190 52.6
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 2.3e-41 172.6 183 54.1
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 8.5e-36 154.1 111 67.6
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.2e-35 151.8 226 46.0
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 4.2e-35 151.8 169 50.9
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.7e-34 149.1 123 62.6
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 5.1e-33 144.8 112 63.4
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 1.3e-31 140.2 190 43.7
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 2.8e-31 139.0 106 63.2
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 3.7e-31 138.7 106 62.3
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.2e-29 133.7 134 58.2
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.3e-28 130.2 104 57.7
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 2.9e-28 129.0 106 58.5
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 9.4e-27 124.0 83 73.5
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 3.0e-25 119.0 103 54.4
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 1.1e-24 117.1 105 54.3
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.3e-24 115.5 123 56.9
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.4e-22 110.2 123 50.4
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.1e-22 109.0 126 50.8
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 5.0e-20 101.7 95 49.5
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.4e-19 100.1 132 47.0
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 1.8e-17 93.2 143 39.9
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 2.3e-17 92.8 112 50.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.1e-16 90.5 59 71.2
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.1e-14 82.4 70 57.1
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 1.9e-11 73.2 47 74.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.2e-11 72.0 120 40.8
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 4.2e-11 72.0 40 87.5
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.2e-08 63.9 124 39.5
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.3e-08 62.4 99 42.4
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 9.1e-06 54.3 39 69.2


User provided reference genes

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