Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 5899.7 2969 100.0
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 4101.6 2978 72.0
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3992.6 2969 70.1
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3989.9 2985 70.6
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3408.2 3077 60.4
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3324.3 3030 59.8
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3207.5 3023 58.8
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3125.9 2964 57.9
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3115.1 3051 56.8
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3021.5 3021 55.5
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3018.4 3142 54.0
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3013.4 3005 56.1
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 2994.9 3043 55.1
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 2994.1 3029 55.7
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 2978.7 3020 55.3
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 2976.4 2981 55.4
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 2969.5 2992 55.0
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2947.5 3013 54.4
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 2941.8 3019 54.6
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2932.9 2983 55.9
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2930.6 3016 54.3
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2929.4 3019 54.4
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2929.4 3029 54.4
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2926.7 3018 54.2
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2921.7 3019 54.2
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 2921.3 3023 53.7
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 2920.6 3065 53.6
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2914.4 3021 54.3
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2899.4 2991 54.3
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 2888.6 3005 53.8
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 2882.0 3003 54.0
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2881.7 2991 54.3
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 2868.6 2950 54.7
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 2867.0 3060 53.7
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 2843.9 3015 53.0
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 2811.6 3011 52.4
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2794.2 2997 52.6
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2787.7 3005 52.5
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2781.9 3010 52.8
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 2777.7 3027 51.7
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 2776.9 2997 52.9
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 2775.7 3013 52.6
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2767.6 3004 52.8
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2759.6 3040 51.8
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 2755.3 2855 54.0
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2751.1 3020 51.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 2736.4 3034 51.4
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2733.0 3043 51.3
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2709.5 3107 50.3
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2700.6 2452 59.5
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 2697.9 3010 50.1
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 2694.5 3029 50.0
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 2691.8 3023 50.5
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 2687.1 3014 51.6
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 2686.8 3019 49.9
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2684.4 2949 52.1
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2669.8 2993 51.3
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 2668.3 2994 51.7
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2664.4 2655 56.3
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 2661.3 2992 51.7
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2660.2 2988 50.9
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2659.4 2988 50.9
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 2654.8 2990 50.8
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 2654.4 2990 50.8
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 2628.2 2995 50.8
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 2621.7 3014 50.3
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2620.1 3009 50.0
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 2617.8 3001 50.5
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 2602.0 2993 50.5
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 2602.0 2996 50.5
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 2589.3 3000 50.2
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 2580.8 3051 49.3
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2557.3 3039 49.1
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2530.7 3005 49.5
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2500.3 2182 60.5
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2356.3 2307 57.0
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2196.4 3010 44.6
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2152.5 1783 65.1
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2130.9 3007 43.4
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 1995.3 2202 50.4
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1900.9 2416 46.2
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1857.4 1797 57.9
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1839.7 2440 45.2
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 1799.3 3099 38.3
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1790.8 2753 41.9
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 1773.8 1353 70.2
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1728.8 1746 55.6
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 1692.2 1441 62.5
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1592.8 1260 68.5
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1572.0 1218 69.1
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1551.6 3127 35.4
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1523.5 3042 35.4
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1456.8 3269 33.3
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1436.0 1192 66.1
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1424.8 1724 46.9
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1390.9 2146 41.0
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1244.6 1252 55.0
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1164.8 979 63.2
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 3.9e-297 1026.5 757 72.1
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 6.5e-292 1009.2 1538 39.9
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.2e-287 994.2 976 56.9
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 7.5e-272 942.6 1295 45.3
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 2.2e-263 914.4 804 62.6
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 5.6e-251 873.2 1280 41.4
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 5.4e-246 856.7 880 56.9
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 1.2e-237 828.9 1490 36.8
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.8e-226 791.2 892 49.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.9e-223 780.4 748 55.9
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 7.8e-221 773.1 1470 36.0
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.6e-216 758.1 592 67.2
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 1.5e-208 732.3 3098 25.8
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 6.4e-199 700.3 586 63.8
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.3e-183 649.4 603 58.7
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 1.2e-149 536.6 451 59.9
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 7.0e-129 467.6 845 36.2
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 8.9e-124 450.7 796 36.3
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 6.4e-122 444.5 253 88.1
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 6.4e-122 444.5 805 35.8
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.4e-121 443.4 795 36.4
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 5.2e-116 424.9 805 36.0
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.4e-113 416.8 639 39.7
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 5.2e-108 398.3 907 31.8
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 8.4e-106 391.0 799 34.0
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.3e-103 383.6 560 44.1
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 2.0e-99 369.8 412 48.8
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 2.9e-98 365.9 530 44.2
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 9.3e-97 360.9 409 48.9
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 4.5e-91 342.0 331 58.6
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 3.9e-87 328.9 301 59.5
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.5e-86 326.2 192 85.4
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 3.8e-82 312.4 462 38.7
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 1.5e-78 300.4 251 58.6
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.4e-76 293.9 819 27.6
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 2.6e-75 289.7 407 44.0
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.4e-75 289.3 312 52.6
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.2e-73 282.7 880 26.7
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 3.8e-66 259.2 352 43.2
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-64 254.2 292 50.7
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-63 250.8 326 46.0
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.8e-61 242.3 672 28.6
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 7.7e-59 235.0 764 25.9
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.5e-50 205.3 961 24.7
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-48 201.1 236 44.9
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 1.1e-46 194.5 116 85.3
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.5e-46 194.1 156 64.7
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.6e-46 193.4 392 33.7
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 5.0e-42 179.1 199 50.3
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.8e-36 160.6 728 27.3
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-34 154.5 117 67.5
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.7e-27 130.2 111 55.9
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 4.4e-22 112.8 109 56.9
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.4e-20 107.8 79 70.9
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.8e-20 107.5 132 50.8
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 7.0e-20 105.5 93 53.8
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.1e-17 98.2 95 61.1
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 4.3e-17 96.3 98 58.2
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 4.3e-17 96.3 138 49.3
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 6.1e-16 92.4 70 67.1
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 4.0e-15 89.7 50 88.0
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 2.5e-09 70.5 64 53.1
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 4.7e-08 66.2 45 71.1
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 4.0e-07 63.2 58 48.3
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 5.2e-07 62.8 47 61.7
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.5e-06 61.2 59 47.5
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.0e-06 60.8 138 30.4


User provided reference genes

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