Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 1.4e-142 509.6 249 100.0
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.3e-92 343.6 250 71.6
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.0e-69 266.5 253 58.5
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 4.3e-64 248.8 239 58.6
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 5.6e-64 248.4 253 54.5
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 6.2e-63 245.0 253 53.4
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 5.3e-62 241.9 252 54.8
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 1.3e-57 227.3 192 58.3
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.8e-57 226.9 200 59.0
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.8e-57 226.9 197 58.9
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 3.0e-57 226.1 198 58.1
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 2.5e-56 223.0 215 54.0
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 3.3e-56 222.6 246 50.4
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 5.6e-56 221.9 202 55.0
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 2.8e-55 219.5 221 53.8
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.8e-55 219.5 198 55.6
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.4e-54 217.2 218 51.8
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 4.0e-54 215.7 227 51.1
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 7.6e-53 211.5 199 53.8
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 2.9e-52 209.5 201 53.2
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.9e-51 206.8 205 53.2
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.9e-51 206.8 203 53.7
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 3.2e-51 206.1 212 51.4
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 4.2e-51 205.7 216 51.4
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 5.5e-51 205.3 201 53.2
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 2.1e-50 203.4 234 53.0
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.3e-49 200.7 203 50.2
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 3.0e-49 199.5 184 55.4
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.0e-49 199.5 200 51.0
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.0e-49 199.5 200 51.0
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 5.1e-49 198.7 215 49.8
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 1.9e-48 196.8 227 45.8
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 2.5e-48 196.4 179 54.2
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 3.3e-48 196.1 195 49.7
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 7.4e-48 194.9 216 49.1
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.3e-47 194.1 237 46.8
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.3e-47 194.1 200 50.0
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 2.8e-47 193.0 216 46.3
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 1.1e-46 191.0 203 50.7
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 1.8e-46 190.3 199 49.2
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 3.1e-46 189.5 216 48.1
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 4.0e-46 189.1 200 49.0
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 4.0e-46 189.1 214 45.8
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 6.9e-46 188.3 231 44.6
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.2e-45 187.6 159 56.0
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.5e-45 187.2 197 49.2
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 2.0e-45 186.8 204 48.0
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 3.4e-45 186.0 201 46.8
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 3.4e-45 186.0 235 46.0
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 5.8e-45 185.3 206 48.5
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 7.6e-45 184.9 207 47.8
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.0e-44 184.5 207 47.3
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.3e-44 184.1 200 46.0
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.3e-44 184.1 219 47.5
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 2.2e-44 183.3 218 46.8
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 2.2e-44 183.3 206 48.1
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 2.9e-44 183.0 227 44.9
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 1.1e-43 181.0 244 44.3
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 2.5e-43 179.9 201 49.8
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 3.2e-43 179.5 213 47.9
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 7.1e-43 178.3 212 44.8
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.2e-42 177.6 207 48.3
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 1.2e-42 177.6 156 60.3
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.2e-42 177.6 202 48.5
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.6e-42 177.2 197 46.2
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.1e-42 176.8 206 45.6
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 6.0e-42 175.3 223 45.3
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 6.0e-42 175.3 201 46.8
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 7.9e-42 174.9 238 44.1
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.0e-41 174.5 200 48.5
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.0e-41 174.5 200 47.5
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.3e-41 174.1 201 48.8
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.8e-41 173.7 200 49.0
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.8e-41 173.7 209 47.4
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.8e-41 173.7 205 44.9
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 2.3e-41 173.3 231 43.3
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 2.3e-41 173.3 210 44.8
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 3.9e-41 172.6 200 47.5
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.5e-40 170.6 197 44.2
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 2.5e-40 169.9 214 44.4
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 3.3e-40 169.5 201 46.3
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 5.7e-40 168.7 235 43.4
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 5.7e-40 168.7 235 43.4
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 7.4e-40 168.3 285 38.6
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 1.3e-39 167.5 235 43.0
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 1.3e-39 167.5 235 43.0
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 1.3e-39 167.5 235 43.0
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.3e-39 167.5 193 46.1
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 2.8e-39 166.4 200 46.0
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 3.7e-39 166.0 202 45.5
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 3.7e-39 166.0 226 43.8
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 6.3e-39 165.2 194 44.8
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 6.3e-39 165.2 205 43.9
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 8.2e-39 164.9 231 43.3
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 8.2e-39 164.9 197 46.2
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 8.2e-39 164.9 158 52.5
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 3.1e-38 162.9 193 44.6
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 4.1e-38 162.5 199 42.7
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 5.3e-38 162.2 200 44.5
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 9.0e-38 161.4 198 46.0
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.5e-37 160.6 231 42.9
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.9e-37 158.7 198 44.9
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.6e-37 158.3 204 44.6
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 2.2e-36 156.8 113 63.7
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 8.5e-36 154.8 230 41.3
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.9e-35 153.7 205 45.9
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.9e-35 153.7 200 42.0
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 5.5e-35 152.1 166 44.6
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 9.4e-35 151.4 228 40.4
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.1e-34 150.2 156 46.8
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.0e-33 146.4 196 40.8
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 6.7e-33 145.2 202 42.6
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 8.8e-33 144.8 191 42.9
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.2e-31 140.2 161 47.2
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 3.7e-31 139.4 202 39.6
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.8e-31 139.0 197 39.1
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 4.8e-31 139.0 193 36.3
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 1.8e-30 137.1 167 43.1
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 2.4e-30 136.7 113 54.0
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 9.1e-30 134.8 93 61.3
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.0e-29 133.7 205 39.5
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.5e-29 132.5 197 39.1
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 5.9e-29 132.1 123 51.2
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.4e-27 127.5 214 39.3
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 3.2e-27 126.3 173 42.2
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 9.4e-27 124.8 104 56.7
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 2.1e-26 123.6 232 36.2
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 7.9e-26 121.7 93 57.0
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 2.3e-25 120.2 169 40.2
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 3.9e-25 119.4 143 44.1
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.3e-23 114.4 199 38.7
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.8e-22 110.5 199 40.2
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 9.1e-22 108.2 192 36.5
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.5e-21 107.5 203 36.5
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.6e-21 106.7 203 36.5
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 4.5e-21 105.9 104 45.2
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.9e-21 105.5 203 36.0
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.0e-20 104.8 199 35.2
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.5e-20 102.1 202 33.7
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.4e-19 100.9 78 59.0
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 3.2e-19 99.8 207 37.7
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 3.2e-19 99.8 165 40.0
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 9.4e-19 98.2 215 30.2
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 2.1e-18 97.1 99 44.4
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 4.7e-18 95.9 224 29.9
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 5.2e-17 92.4 158 38.0
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 7.4e-16 88.6 93 47.3
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 9.1e-14 81.6 284 27.5
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 9.1e-14 81.6 156 35.9
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 8.8e-09 65.1 221 27.1
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 2.6e-08 63.5 145 33.8
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 4.4e-08 62.8 86 43.0
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 4.1e-06 56.2 154 29.9


User provided reference genes

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