Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 2.0e-259 898.7 471 100.0
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.9e-182 642.9 478 72.8
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.9e-182 642.9 478 72.8
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 2.1e-176 622.9 495 70.1
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 6.7e-175 617.8 473 72.3
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.4e-172 610.1 469 71.4
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.3e-165 587.0 470 69.6
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 2.8e-165 585.9 476 68.7
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.5e-161 572.8 469 68.2
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.6e-160 570.1 475 66.9
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.0e-159 567.4 470 67.7
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.8e-159 566.6 470 67.7
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.3e-158 562.4 468 67.9
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 3.3e-158 562.4 471 67.3
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 9.7e-158 560.8 479 66.8
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.3e-157 560.5 461 67.0
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.7e-157 560.1 466 68.2
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 6.3e-157 558.1 435 70.8
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 5.3e-156 555.1 429 70.2
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.5e-155 553.5 475 66.1
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 3.4e-155 552.4 468 66.7
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 7.7e-155 551.2 464 67.9
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.0e-154 550.8 435 69.2
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.0e-154 548.5 471 65.4
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.1e-153 547.4 465 66.7
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.1e-153 547.4 458 66.2
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.9e-153 546.6 465 66.2
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 2.5e-153 546.2 453 66.9
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 4.2e-153 545.4 438 68.5
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 7.2e-153 544.7 480 64.8
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 7.2e-153 544.7 429 70.9
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 9.4e-153 544.3 439 68.8
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.2e-152 543.9 480 64.8
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-152 543.5 470 65.5
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.1e-152 543.1 483 65.8
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.7e-152 542.7 476 65.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 3.6e-152 542.3 446 67.3
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 4.7e-152 542.0 474 65.8
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.1e-152 541.6 467 66.8
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.4e-151 540.4 467 66.0
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.8e-151 540.0 472 63.6
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 5.1e-151 538.5 433 69.1
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 5.1e-151 538.5 433 66.7
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.1e-150 537.3 474 65.2
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.5e-150 537.0 431 68.7
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.6e-150 536.2 465 65.8
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 3.3e-150 535.8 457 65.4
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 4.4e-150 535.4 453 66.0
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.4e-150 535.4 439 68.8
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 4.4e-150 535.4 453 66.2
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 4.4e-150 535.4 447 67.3
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.3e-149 533.9 464 65.7
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.2e-149 533.1 471 66.5
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.2e-149 533.1 476 63.4
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 8.2e-149 531.2 479 64.7
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 2.4e-148 529.6 438 66.9
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 3.1e-148 529.3 460 65.4
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 5.3e-148 528.5 488 63.1
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.0e-147 526.6 510 59.2
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 5.9e-147 525.0 455 64.6
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 5.9e-147 525.0 443 65.7
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 7.7e-147 524.6 446 65.7
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 1.3e-146 523.9 428 66.1
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 3.8e-146 522.3 432 66.0
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 5.0e-146 521.9 467 64.0
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 2.5e-145 519.6 428 66.6
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 4.2e-145 518.8 469 64.2
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 5.5e-145 518.5 471 63.9
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 3.6e-144 515.8 430 65.6
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.3e-143 513.1 455 66.2
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 3.0e-143 512.7 441 64.2
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 8.8e-143 511.1 420 67.1
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 8.8e-143 511.1 420 67.1
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 2.6e-142 509.6 458 65.7
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.4e-142 508.8 453 63.6
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 7.4e-142 508.1 468 62.2
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 9.7e-142 507.7 465 62.2
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 1.3e-141 507.3 442 63.3
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 2.2e-141 506.5 483 60.7
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 2.8e-141 506.1 465 61.5
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 3.7e-141 505.8 466 61.4
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 6.3e-141 505.0 459 62.3
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 6.3e-141 505.0 459 62.3
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.8e-140 503.4 427 64.2
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 4.1e-140 502.3 523 57.0
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 7.0e-140 501.5 590 53.7
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 9.1e-140 501.1 464 62.9
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.6e-139 499.6 430 63.5
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.5e-137 493.8 443 63.4
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 3.2e-137 492.7 459 61.4
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 4.2e-137 492.3 424 64.2
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 8.0e-136 488.0 451 62.1
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 4.0e-135 485.7 478 59.8
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 5.2e-135 485.3 477 59.3
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 5.7e-134 481.9 453 60.5
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 3.1e-132 476.1 496 57.7
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.0e-131 473.4 423 61.2
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 2.7e-131 473.0 412 61.9
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.5e-130 468.4 437 62.9
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.9e-129 466.8 431 59.9
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.7e-128 462.2 423 60.3
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 8.0e-128 461.5 472 57.8
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 6.8e-127 458.4 383 66.1
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.5e-126 457.2 515 52.0
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 7.5e-126 454.9 467 56.1
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.8e-124 450.3 477 56.0
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 9.1e-124 448.0 422 58.1
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 9.5e-121 438.0 422 57.6
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.2e-120 437.6 429 59.4
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.6e-120 436.0 422 57.3
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.2e-118 431.0 392 63.0
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.3e-117 425.2 467 56.3
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 6.1e-112 408.7 352 66.2
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.1e-112 408.7 434 55.1
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 5.2e-111 405.6 433 55.2
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 7.5e-110 401.7 393 61.6
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.4e-109 398.7 434 53.5
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 8.3e-109 398.3 397 56.9
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.8e-107 391.7 389 56.3
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 2.3e-103 380.2 377 57.6
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 2.2e-101 373.6 397 57.2
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.1e-100 371.3 391 55.0
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.9e-100 370.5 391 54.2
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 9.2e-100 368.2 395 57.2
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.8e-96 356.7 397 55.4
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 5.6e-89 332.4 637 38.6
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 6.8e-87 325.5 363 54.8
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.8e-83 312.0 421 47.0
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.7e-82 310.8 314 59.9
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.5e-78 297.7 335 52.2
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.4e-78 296.6 358 50.6
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 2.9e-77 293.5 388 46.6
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.2e-69 267.3 340 50.3
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 6.4e-69 265.8 289 52.9
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 9.6e-65 251.9 308 50.3
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.5e-62 244.6 315 47.6
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 4.6e-59 233.0 255 56.1
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 2.5e-57 227.3 131 87.8
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 2.8e-56 223.8 230 57.8
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 7.2e-44 182.6 134 75.4
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 2.1e-43 181.0 191 51.8
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 5.1e-42 176.4 113 77.9
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 3.7e-40 170.2 156 64.7
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 3.4e-38 163.7 161 64.0
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 7.7e-38 162.5 202 50.5
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 3.9e-34 150.2 122 71.3
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 1.8e-31 141.4 107 68.2
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.0e-29 135.6 97 70.1
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 1.3e-24 118.6 91 68.1
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.7e-24 118.2 104 66.3
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.1e-23 113.6 66 87.9
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 1.2e-22 112.1 74 71.6
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 3.5e-22 110.5 64 81.2
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 3.8e-21 107.1 80 70.0
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.8e-21 107.1 60 90.0
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.8e-18 98.2 57 77.2
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 5.2e-18 96.7 60 81.7
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 8.8e-18 95.9 108 51.9
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.7e-16 91.7 82 61.0
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.8e-16 90.1 58 77.6
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 1.1e-15 89.0 76 63.2
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.1e-15 87.4 52 82.7
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 9.1e-15 85.9 65 64.6
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.7e-14 84.3 52 80.8
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 5.0e-13 80.1 52 76.9
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 6.5e-13 79.7 45 82.2
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 5.5e-12 76.6 140 36.4
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.8e-10 71.6 84 53.6
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 4.4e-09 67.0 81 54.3
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.7e-09 66.6 41 70.7
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.7e-08 63.9 36 88.9
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 3.1e-07 60.8 67 50.7


User provided reference genes

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