Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 2.1e-193 679.1 406 100.0
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 4.9e-158 561.6 412 77.2
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 3.0e-123 446.0 419 66.8
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 1.2e-111 407.5 456 60.5
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 2.7e-108 396.4 419 62.5
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 2.7e-108 396.4 455 60.0
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 2.0e-103 380.2 425 60.5
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 1.0e-99 367.9 416 62.3
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 3.0e-99 366.3 425 59.5
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 1.1e-98 364.4 409 57.9
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 4.4e-98 362.5 419 60.4
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 9.7e-98 361.3 427 56.2
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 2.2e-97 360.1 420 56.4
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 7.7e-95 351.7 420 56.0
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 5.5e-93 345.5 408 59.6
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 9.4e-93 344.7 423 58.9
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 6.1e-92 342.0 397 56.2
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 6.1e-92 342.0 397 56.2
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.1e-90 337.8 420 59.0
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 1.1e-90 337.8 424 59.0
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 8.2e-89 331.6 460 54.1
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 1.1e-88 331.3 441 57.6
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 1.4e-88 330.9 422 54.7
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.2e-87 327.8 430 53.3
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 3.5e-87 326.2 423 56.3
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 1.0e-86 324.7 429 56.2
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.3e-86 324.3 432 50.5
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 1.7e-86 323.9 435 51.7
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 3.8e-86 322.8 378 57.9
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 5.0e-86 322.4 432 49.8
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 5.0e-86 322.4 422 55.9
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 5.0e-86 322.4 407 58.2
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 6.5e-86 322.0 421 56.1
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 8.5e-86 321.6 426 54.2
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 3.2e-85 319.7 402 57.2
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 3.2e-85 319.7 417 54.0
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 5.5e-85 318.9 441 51.5
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 3.6e-84 316.2 389 56.3
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 8.0e-84 315.1 406 56.4
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 8.0e-84 315.1 430 55.8
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 2.3e-83 313.5 412 53.4
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 8.8e-83 311.6 403 55.8
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 7.5e-82 308.5 420 54.8
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 1.3e-81 307.8 403 54.1
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 1.3e-81 307.8 430 54.2
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 1.7e-81 307.4 429 53.1
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 2.2e-81 307.0 443 49.7
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 4.8e-81 305.8 426 54.0
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 4.8e-81 305.8 424 48.8
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 4.8e-81 305.8 406 52.7
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 1.1e-80 304.7 420 52.6
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 1.4e-80 304.3 443 54.0
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 1.8e-80 303.9 420 53.8
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 7.0e-80 302.0 443 50.8
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 1.6e-79 300.8 399 51.6
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 2.0e-79 300.4 394 54.3
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 2.9e-78 296.6 425 46.6
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 3.8e-78 296.2 429 50.1
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 6.5e-78 295.4 423 46.6
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 1.9e-77 293.9 423 46.1
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.5e-77 293.5 406 54.4
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.2e-77 292.7 428 52.8
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 5.5e-77 292.4 413 50.6
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.2e-76 291.2 432 53.0
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 2.1e-76 290.4 429 52.0
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 2.7e-76 290.0 428 50.9
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.7e-76 289.3 425 52.0
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 6.1e-76 288.9 438 51.4
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 6.1e-76 288.9 429 52.7
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 1.0e-75 288.1 439 48.5
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.4e-75 287.7 423 52.0
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 6.8e-75 285.4 401 51.4
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 6.8e-75 285.4 350 57.1
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 1.2e-74 284.6 411 47.2
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.0e-74 283.9 429 52.0
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 2.0e-74 283.9 430 50.9
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 7.5e-74 282.0 414 51.2
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 1.7e-73 280.8 449 49.2
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 2.2e-73 280.4 431 48.7
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 2.8e-73 280.0 406 50.2
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 6.3e-73 278.9 450 49.8
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 2.0e-71 273.9 432 50.9
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 3.5e-71 273.1 422 48.8
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 5.9e-71 272.3 432 49.3
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 1.0e-70 271.6 349 51.0
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 1.3e-70 271.2 441 46.5
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 3.8e-70 269.6 451 46.1
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.1e-69 268.1 305 55.7
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 4.2e-69 266.2 200 74.0
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 5.5e-69 265.8 200 73.5
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 8.0e-68 261.9 419 49.6
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 1.4e-67 261.2 411 44.5
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 1.8e-64 250.8 234 63.7
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.7e-62 244.2 177 76.3
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 3.1e-59 233.4 172 73.8
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 5.2e-59 232.6 408 43.4
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 6.8e-59 232.3 472 43.9
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 8.9e-59 231.9 457 44.6
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 2.0e-58 230.7 426 48.6
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 2.0e-58 230.7 394 40.4
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 4.4e-58 229.6 173 69.9
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 5.8e-58 229.2 426 48.4
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 5.8e-58 229.2 177 68.4
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 1.9e-56 224.2 173 69.4
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 1.9e-56 224.2 457 44.4
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 1.9e-56 224.2 461 45.1
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 1.6e-55 221.1 169 71.0
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 4.6e-55 219.5 173 68.2
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.0e-54 218.4 341 53.4
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 5.0e-54 216.1 170 68.8
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 5.0e-54 216.1 170 68.8
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 6.6e-54 215.7 172 67.4
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 6.6e-54 215.7 172 67.4
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 6.6e-54 215.7 349 53.0
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 7.3e-53 212.2 434 42.4
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 1.2e-52 211.5 442 43.0
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 8.9e-51 205.3 401 41.4
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 1.2e-50 204.9 385 48.3
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.4e-48 198.0 311 46.3
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 3.5e-47 193.4 147 70.1
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 4.6e-47 193.0 424 37.3
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 2.6e-42 177.2 187 55.6
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 3.7e-41 173.3 160 61.9
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 1.4e-40 171.4 173 56.1
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 4.1e-40 169.9 418 35.9
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 3.5e-39 166.8 419 35.6
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 2.1e-36 157.5 292 38.0
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 6.8e-35 152.5 126 64.3
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 1.9e-21 107.8 180 42.2
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 1.1e-19 102.1 150 42.0
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 1.4e-19 101.7 75 72.0
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 4.5e-18 96.7 86 64.0
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 4.5e-18 96.7 86 65.1
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 5.8e-18 96.3 79 68.4
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 7.6e-18 95.9 65 76.9
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 8.4e-17 92.4 63 76.2
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 2.8e-12 77.4 66 57.6
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 6.9e-11 72.8 47 76.6
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 3.4e-10 70.5 133 34.6
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 2.9e-09 67.4 70 52.9
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 8.4e-09 65.9 74 50.0
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 1.2e-07 62.0 99 38.4
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 2.1e-07 61.2 192 25.0
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.1e-07 61.2 137 29.9
Lsat_1_v5_gn_6_68201 Lactuca sativa HOM05D005186 ORTHO05D006278 4.6e-07 60.1 34 88.2
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 1.3e-06 58.5 66 54.5
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 1.8e-06 58.2 99 36.4
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.8e-06 58.2 100 33.0
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 2.3e-06 57.8 162 25.9
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.0e-06 57.4 141 28.4
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 5.1e-06 56.6 99 35.4
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 5.1e-06 56.6 99 35.4
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 5.1e-06 56.6 107 32.7
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 6.7e-06 56.2 113 29.2
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 6.7e-06 56.2 219 25.1
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 8.7e-06 55.8 138 29.7
Pp3c26_10790 Physcomitrium patens HOM05D006269 ORTHO05D001487 8.7e-06 55.8 195 26.7
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 8.7e-06 55.8 100 34.0


User provided reference genes

Program Settings