Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01177 Striga asiatica HOM05D001099 ORTHO05D008869 7.2e-127 457.2 224 100.0
SGA_v2.0_scaffold2G01176 Striga asiatica HOM05D006974 ORTHO05D008869 4.9e-59 231.9 213 60.1
SGA_v2.0_scaffold2G01178 Striga asiatica HOM05D001099 ORTHO05D000958 8.2e-22 108.2 214 36.9
SGA_v2.0_scaffold2G01204 Striga asiatica HOM05D001099 ORTHO05D000958 2.8e-14 83.2 100 43.0
SGA_v2.0_scaffold238G43953 Striga asiatica HOM05D001099 ORTHO05D405309 6.3e-14 82.0 97 43.3
Oeu035950.1 Olea europaea HOM05D001099 ORTHO05D000958 8.5e-11 71.6 81 50.6
MSTRG.129 Avicennia marina HOM05D001099 ORTHO05D000958 2.5e-10 70.1 82 46.3
SGA_v2.0_scaffold136G34998 Striga asiatica HOM05D001099 ORTHO05D000958 2.5e-10 70.1 80 42.5
SalBow2G2546 Salvia bowleyana HOM05D001099 ORTHO05D000958 3.2e-10 69.7 87 42.5
Aqoxy5G03898 Aquilegia oxysepala HOM05D001099 ORTHO05D000958 4.2e-10 69.3 86 43.0
MSTRG.27200 Avicennia marina HOM05D001099 ORTHO05D000958 9.4e-10 68.2 88 43.2
MSTRG.8412 Avicennia marina HOM05D001099 ORTHO05D000958 9.4e-10 68.2 88 44.3
Nn6g33979 Nelumbo nucifera HOM05D001099 ORTHO05D000958 1.6e-09 67.4 86 39.5
Migut.C00061 Erythranthe guttata HOM05D001099 ORTHO05D000958 2.1e-09 67.0 88 40.9
Migut.F01183 Erythranthe guttata HOM05D001099 ORTHO05D000958 2.1e-09 67.0 78 44.9
Nitab4.5_0007598g0030 Nicotiana tabacum HOM05D001099 ORTHO05D000958 2.1e-09 67.0 80 45.0
BraA03t10910Z Brassica rapa HOM05D001099 ORTHO05D000958 2.7e-09 66.6 81 43.2
Migut.F00478 Erythranthe guttata HOM05D001099 ORTHO05D000958 3.6e-09 66.2 88 39.8
QL12p012417 Quercus lobata HOM05D001099 ORTHO05D000958 3.6e-09 66.2 91 39.6
GSVIVG01018654001 Vitis vinifera HOM05D001099 ORTHO05D000958 3.6e-09 66.2 78 43.6
Migut.C00064 Erythranthe guttata HOM05D001099 ORTHO05D000958 4.6e-09 65.9 88 39.8
Nitab4.5_0000312g0130 Nicotiana tabacum HOM05D001099 ORTHO05D000958 4.6e-09 65.9 80 43.8
Cfa012707 Carpinus fangiana HOM05D001099 ORTHO05D000958 6.1e-09 65.5 86 40.7
MSTRG.27202 Avicennia marina HOM05D001099 ORTHO05D000958 7.9e-09 65.1 87 41.4
Migut.F00477 Erythranthe guttata HOM05D001099 ORTHO05D000958 7.9e-09 65.1 88 42.0
Cc02_g04250 Coffea canephora HOM05D001099 ORTHO05D000958 1.0e-08 64.7 98 37.8
TWI81G0609 Tripterygium wilfordii HOM05D001099 ORTHO05D000958 1.0e-08 64.7 91 38.5
CANSAT56G2602 Cannabis sativa HOM05D001099 ORTHO05D000958 1.4e-08 64.3 78 46.2
CANSAT56G3256 Cannabis sativa HOM05D001099 ORTHO05D000958 1.4e-08 64.3 78 46.2
Migut.C00062 Erythranthe guttata HOM05D001099 ORTHO05D000958 1.4e-08 64.3 87 39.1
Dinv28574 Davidia involucrata HOM05D001099 ORTHO05D000958 1.8e-08 63.9 78 44.9
Migut.C00065 Erythranthe guttata HOM05D001099 ORTHO05D000958 1.8e-08 63.9 186 30.1
Lj8P261T44 Lonicera japonica HOM05D001099 ORTHO05D000958 2.3e-08 63.5 86 38.4
PSO063G5704 Papaver somniferum HOM05D001099 ORTHO05D000958 2.3e-08 63.5 84 38.1
PSO782G1367 Papaver somniferum HOM05D001099 ORTHO05D000958 2.3e-08 63.5 84 38.1
Peaxi162Scf00002g00191 Petunia axillaris HOM05D001099 ORTHO05D000958 2.3e-08 63.5 82 42.7
Lj8P261T47 Lonicera japonica HOM05D001099 ORTHO05D000958 5.1e-08 62.4 86 39.5
Nn1g01033 Nelumbo nucifera HOM05D001099 ORTHO05D000958 5.1e-08 62.4 86 39.5
Thecc.03G155700 Theobroma cacao HOM05D001099 ORTHO05D000958 5.1e-08 62.4 78 43.6
unitig_736.g22948 Utricularia gibba HOM05D001099 ORTHO05D000958 5.1e-08 62.4 79 43.0
A03p16190 Brassica napus HOM05D001099 ORTHO05D000958 6.7e-08 62.0 77 40.3
Gorai.008G216100 Gossypium raimondii HOM05D001099 ORTHO05D000958 6.7e-08 62.0 78 43.6
Sabra03G0075700 Salix brachista HOM05D001099 ORTHO05D000958 6.7e-08 62.0 77 36.4
Sp6g13600 Schrenkiella parvula HOM05D001099 ORTHO05D000958 6.7e-08 62.0 80 42.5
TPR.G20264 Trifolium pratense HOM05D001099 ORTHO05D000958 6.7e-08 62.0 78 41.0
Haze_07927 Corylus avellana HOM05D001099 ORTHO05D000958 8.8e-08 61.6 86 39.5
Hma1.2p1_0432F.1_g151730 Hydrangea macrophylla HOM05D001099 ORTHO05D000958 8.8e-08 61.6 84 42.9
Potri.003G109200 Populus trichocarpa HOM05D001099 ORTHO05D000958 8.8e-08 61.6 78 42.3
TWI23G0452 Tripterygium wilfordii HOM05D001099 ORTHO05D000958 8.8e-08 61.6 78 43.6
vmacro06798 Vaccinium macrocarpon HOM05D001099 ORTHO05D000958 8.8e-08 61.6 78 39.7
Atru.chr9.1326 Acer truncatum HOM05D001099 ORTHO05D000958 1.1e-07 61.2 90 35.6
CSS0016514 Camellia sinensis var. sinensis HOM05D001099 ORTHO05D000958 1.5e-07 60.8 191 28.3
CAN.G1367.2 Capsicum annuum HOM05D001099 ORTHO05D000958 1.5e-07 60.8 80 41.2
Dinv21632 Davidia involucrata HOM05D001099 ORTHO05D000958 1.5e-07 60.8 86 39.5
Solyc08g078700.2 Solanum lycopersicum HOM05D001099 ORTHO05D000958 1.5e-07 60.8 88 37.5
Sopen08g027180 Solanum pennellii HOM05D001099 ORTHO05D000958 1.5e-07 60.8 88 37.5
PGSC0003DMG400004808 Solanum tuberosum HOM05D001099 ORTHO05D000958 1.5e-07 60.8 88 37.5
TWI39G1145 Tripterygium wilfordii HOM05D001099 ORTHO05D000958 2.0e-07 60.5 78 42.3
AT5G51440 Arabidopsis thaliana HOM05D001099 ORTHO05D000958 2.6e-07 60.1 79 40.5
BcaB08g35500 Brassica carinata HOM05D001099 ORTHO05D000958 2.6e-07 60.1 79 39.2
Atru.chr1.726 Acer truncatum HOM05D001099 ORTHO05D000958 3.3e-07 59.7 78 38.5
CAN.G1367.3 Capsicum annuum HOM05D001099 ORTHO05D000958 3.3e-07 59.7 80 40.0
Gohir.A12G198400 Gossypium hirsutum HOM05D001099 ORTHO05D000958 3.3e-07 59.7 78 41.0
SGA_v2.0_scaffold4G02380 Striga asiatica HOM05D001099 ORTHO05D000958 3.3e-07 59.7 83 38.6
TAR082G0002 Trochodendron aralioides HOM05D001099 ORTHO05D000958 3.3e-07 59.7 81 38.3
BcaNung06351 Brassica carinata HOM05D001099 ORTHO05D000958 4.4e-07 59.3 157 30.6
Cpa.g.sc3.323 Carica papaya HOM05D001099 ORTHO05D000958 4.4e-07 59.3 85 36.5
Cc08_g12550 Coffea canephora HOM05D001099 ORTHO05D000958 4.4e-07 59.3 92 32.6
Glyma.12G013100 Glycine max HOM05D001099 ORTHO05D000958 4.4e-07 59.3 78 41.0
Gohir.D12G201000 Gossypium hirsutum HOM05D001099 ORTHO05D000958 4.4e-07 59.3 78 41.0
Manes.06G134700 Manihot esculenta HOM05D001099 ORTHO05D000958 4.4e-07 59.3 78 41.0
PGR031G0040 Punica granatum HOM05D001099 ORTHO05D000958 4.4e-07 59.3 82 39.0
Rhsim03G0167300 Rhododendron simsii HOM05D001099 ORTHO05D000958 4.4e-07 59.3 78 41.0
Actinidia14437 Actinidia chinensis HOM05D001099 ORTHO05D000958 5.7e-07 58.9 86 34.9
Carub.0008s1146 Capsella rubella HOM05D001099 ORTHO05D000958 5.7e-07 58.9 80 40.0
CAN.G164.15 Capsicum annuum HOM05D001099 ORTHO05D000958 5.7e-07 58.9 80 40.0
CDE03G0474 Ceratophyllum demersum HOM05D001099 ORTHO05D000958 5.7e-07 58.9 85 38.8
Gohir.A08G170900 Gossypium hirsutum HOM05D001099 ORTHO05D000958 5.7e-07 58.9 84 38.1
Medtr7g102590 Medicago truncatula HOM05D001099 ORTHO05D000958 5.7e-07 58.9 103 35.0
GSVIVG01001315001 Vitis vinifera HOM05D001099 ORTHO05D000958 5.7e-07 58.9 86 40.7
Aa31LG7G10380 Aethionema arabicum HOM05D001099 ORTHO05D000958 7.4e-07 58.5 86 39.5
Thhalv10026232m.g Eutrema salsugineum HOM05D001099 ORTHO05D000958 7.4e-07 58.5 81 39.5
Peaxi162Scf00023g01123 Petunia axillaris HOM05D001099 ORTHO05D000958 7.4e-07 58.5 78 41.0
Sp7g23220 Schrenkiella parvula HOM05D001099 ORTHO05D000958 7.4e-07 58.5 81 42.0
AUR62007509 Chenopodium quinoa HOM05D001099 ORTHO05D000958 9.7e-07 58.2 89 38.2
AUR62039962 Chenopodium quinoa HOM05D001099 ORTHO05D000958 9.7e-07 58.2 89 38.2
Ca_19626_v3 Cicer arietinum L. HOM05D001099 ORTHO05D000958 9.7e-07 58.2 78 38.5
COL.COLO4_37189 Corchorus olitorius HOM05D001099 ORTHO05D000958 9.7e-07 58.2 80 36.2
DCAR_027781 Daucus carota HOM05D001099 ORTHO05D000958 9.7e-07 58.2 113 31.0
HanXRQChr03g0088611 Helianthus annuus HOM05D001099 ORTHO05D000958 9.7e-07 58.2 78 37.2
MD07G1253800 Malus domestica HOM05D001099 ORTHO05D000958 9.7e-07 58.2 90 35.6
CDE05G1533 Ceratophyllum demersum HOM05D001099 ORTHO05D000958 1.3e-06 57.8 77 39.0
Ciclev10005925m.g Citrus clementina HOM05D001099 ORTHO05D000958 1.3e-06 57.8 198 29.8
Ciclev10006241m.g Citrus clementina HOM05D001099 ORTHO05D000958 1.3e-06 57.8 77 36.4
ECA240G1483 Erigeron canadensis HOM05D001099 ORTHO05D000958 1.3e-06 57.8 81 35.8
RcHm_v2.0_Chr7g0203041 Rosa chinensis HOM05D001099 ORTHO05D000958 1.3e-06 57.8 154 28.6
BcaC09g50798 Brassica carinata HOM05D001099 ORTHO05D000958 1.7e-06 57.4 157 30.6
C01p20640 Brassica napus HOM05D001099 ORTHO05D000958 1.7e-06 57.4 157 30.6
BolC1t01993H Brassica oleracea HOM05D001099 ORTHO05D000958 1.7e-06 57.4 157 30.6
CARHR232600 Cardamine hirsuta HOM05D001099 ORTHO05D000958 1.7e-06 57.4 81 39.5
CARHR264170 Cardamine hirsuta HOM05D001099 ORTHO05D000958 1.7e-06 57.4 85 37.6
CiPaw.12G109200 Carya illinoinensis HOM05D001099 ORTHO05D000958 1.7e-06 57.4 86 37.2
Hma1.2p1_1640F.1_g295060 Hydrangea macrophylla HOM05D001099 ORTHO05D000958 1.7e-06 57.4 86 36.0
Lsat_1_v5_gn_3_481 Lactuca sativa HOM05D001099 ORTHO05D000958 1.7e-06 57.4 82 35.4
Lalb_Chr01g0000691 Lupinus albus HOM05D001099 ORTHO05D000958 1.7e-06 57.4 80 40.0
Duzib205G0330 Durio zibethinus HOM05D001099 ORTHO05D000958 2.2e-06 57.0 80 41.2
FAN08G3558 Fragaria x ananassa HOM05D001099 ORTHO05D000958 2.2e-06 57.0 87 31.0
FAN13G2298 Fragaria x ananassa HOM05D001099 ORTHO05D000958 2.2e-06 57.0 87 31.0
MD06G1060300 Malus domestica HOM05D001099 ORTHO05D000958 2.2e-06 57.0 84 34.5
Manes.14G036000 Manihot esculenta HOM05D001099 ORTHO05D000958 2.2e-06 57.0 77 41.6
Medtr0004s0510 Medicago truncatula HOM05D001099 ORTHO05D000958 2.2e-06 57.0 78 38.5
PGR042G2034 Punica granatum HOM05D001099 ORTHO05D000958 2.2e-06 57.0 80 35.0
Sed0013728 Sechium edule HOM05D001099 ORTHO05D000958 2.2e-06 57.0 79 35.4
GSVIVG01001316001 Vitis vinifera HOM05D001099 ORTHO05D000958 2.2e-06 57.0 86 37.2
Thhalv10014661m.g Eutrema salsugineum HOM05D001099 ORTHO05D000958 2.8e-06 56.6 82 36.6
Solyc08g078710.3 Solanum lycopersicum HOM05D001099 ORTHO05D010560 2.8e-06 56.6 94 35.1
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 2.8e-06 56.6 94 35.1
TAR375G0093 Trochodendron aralioides HOM05D001099 ORTHO05D000958 2.8e-06 56.6 70 44.3
Atru.chr1.727 Acer truncatum HOM05D001099 ORTHO05D000958 3.7e-06 56.2 78 41.0
EL10Ac5g13076 Beta vulgaris HOM05D001099 ORTHO05D000958 3.7e-06 56.2 90 36.7
A01p16470 Brassica napus HOM05D001099 ORTHO05D000958 3.7e-06 56.2 157 29.9
BraA01t01601Z Brassica rapa HOM05D001099 ORTHO05D000958 3.7e-06 56.2 157 29.9
Oeu022488.1 Olea europaea HOM05D001099 ORTHO05D000958 3.7e-06 56.2 78 39.7
Prupe.5G071200 Prunus persica HOM05D001099 ORTHO05D000958 3.7e-06 56.2 85 32.9
A10p09350 Brassica napus HOM05D001099 ORTHO05D000958 4.8e-06 55.8 77 37.7
BraA10t43011Z Brassica rapa HOM05D001099 ORTHO05D000958 4.8e-06 55.8 77 37.7
COL.COLO4_14123 Corchorus olitorius HOM05D001099 ORTHO05D000958 4.8e-06 55.8 78 37.2
Carub.0007s1583 Capsella rubella HOM05D001099 ORTHO05D000958 6.3e-06 55.5 179 30.7
FvH4_5g18720 Fragaria vesca HOM05D001099 ORTHO05D000958 6.3e-06 55.5 87 31.0
FAN14G4977 Fragaria x ananassa HOM05D000136 ORTHO05D007933 6.3e-06 55.5 113 35.4
FAN18G3089 Fragaria x ananassa HOM05D001099 ORTHO05D000958 6.3e-06 55.5 87 31.0
Oeu038321.1 Olea europaea HOM05D001099 ORTHO05D000958 6.3e-06 55.5 86 36.0
Phvul.011G016100 Phaseolus vulgaris HOM05D001099 ORTHO05D000958 6.3e-06 55.5 77 35.1
AL8G25730 Arabidopsis lyrata HOM05D001099 ORTHO05D000958 8.2e-06 55.1 81 37.0
BcaC04g20675 Brassica carinata HOM05D001099 ORTHO05D000958 8.2e-06 55.1 77 39.0
C09p40730 Brassica napus HOM05D001099 ORTHO05D000958 8.2e-06 55.1 77 39.0
BolC9t56952H Brassica oleracea HOM05D001099 ORTHO05D000958 8.2e-06 55.1 77 39.0
MELO3C013946.2 Cucumis melo HOM05D001099 ORTHO05D000958 8.2e-06 55.1 85 32.9
FvH4_7g27540 Fragaria vesca HOM05D001099 ORTHO05D000958 8.2e-06 55.1 77 40.3
FAN05G4533 Fragaria x ananassa HOM05D000136 ORTHO05D007933 8.2e-06 55.1 113 35.4
FAN06G1895 Fragaria x ananassa HOM05D001099 ORTHO05D000958 8.2e-06 55.1 77 40.3
FAN06G3855 Fragaria x ananassa HOM05D001099 ORTHO05D000958 8.2e-06 55.1 77 40.3
FAN10G0801 Fragaria x ananassa HOM05D001099 ORTHO05D000958 8.2e-06 55.1 77 40.3
Psat4g136720 Pisum sativum HOM05D001099 ORTHO05D000958 8.2e-06 55.1 79 39.2


User provided reference genes

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