Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 1.6e-132 476.1 238 100.0
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.8e-97 359.0 235 80.0
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 5.9e-95 351.3 235 76.6
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 5.5e-93 344.7 235 74.5
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 5.5e-93 344.7 235 74.5
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.2e-82 310.5 234 68.4
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.5e-82 310.1 237 67.1
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.7e-81 306.6 235 66.8
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 8.2e-81 304.3 235 68.5
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 8.2e-81 304.3 234 66.7
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.1e-80 303.9 218 70.2
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.8e-80 303.1 234 66.2
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.1e-80 302.0 237 65.8
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 5.3e-80 301.6 234 66.7
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 5.3e-80 301.6 234 65.8
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 1.2e-79 300.4 236 66.5
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.6e-79 300.1 234 65.4
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 4.5e-79 298.5 237 65.4
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 4.5e-79 298.5 234 65.0
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.8e-78 295.4 234 65.0
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 3.8e-78 295.4 234 64.5
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.1e-77 293.9 234 65.0
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.2e-76 290.4 237 64.1
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.6e-76 290.0 236 64.4
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 2.1e-76 289.7 236 64.4
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 2.7e-76 289.3 237 63.7
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 4.7e-76 288.5 235 66.4
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 6.1e-76 288.1 236 64.0
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 6.1e-76 288.1 232 62.9
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 1.0e-75 287.3 237 62.9
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.0e-75 287.3 239 64.9
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 1.4e-75 287.0 235 67.7
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 4.0e-75 285.4 236 66.5
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 8.8e-75 284.3 235 63.8
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.0e-74 283.1 236 65.7
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.6e-74 282.7 238 63.9
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.6e-74 282.7 235 64.7
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 2.6e-74 282.7 234 62.8
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 2.6e-74 282.7 216 67.1
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.7e-73 280.0 229 66.4
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.7e-73 280.0 238 66.0
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 1.7e-73 280.0 234 63.2
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 3.7e-73 278.9 234 61.1
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 4.8e-73 278.5 236 65.7
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 6.3e-73 278.1 236 62.7
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.8e-72 276.6 236 63.1
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.8e-72 276.6 236 63.6
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.4e-72 276.2 237 60.8
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 7.0e-72 274.6 231 64.1
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 9.1e-72 274.2 246 61.4
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 9.1e-72 274.2 231 64.5
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 5.0e-70 268.5 240 59.6
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 3.3e-69 265.8 236 59.3
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 4.2e-69 265.4 234 60.3
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 9.5e-69 264.2 237 60.3
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 4.7e-68 261.9 234 60.7
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.3e-67 259.6 234 62.0
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 4.0e-67 258.8 238 59.7
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 2.0e-66 256.5 238 57.6
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 3.4e-66 255.8 247 56.7
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.7e-65 252.3 235 57.9
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 1.1e-64 250.8 234 56.4
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.8e-64 250.0 234 57.3
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 2.4e-64 249.6 238 56.7
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.4e-64 249.6 234 54.7
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 4.1e-64 248.8 238 57.1
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.5e-63 245.4 232 56.0
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 4.5e-63 245.4 218 58.7
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 5.9e-63 245.0 234 57.3
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 2.9e-62 242.7 236 56.8
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 2.9e-62 242.7 239 56.5
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 5.0e-62 241.9 233 56.7
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 5.0e-62 241.9 245 56.3
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 6.6e-62 241.5 233 56.7
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 6.6e-62 241.5 230 57.0
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-61 240.7 233 56.2
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.5e-61 240.4 239 56.5
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.9e-61 240.0 233 55.8
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.9e-61 240.0 216 57.9
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.9e-61 240.0 230 57.0
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 5.6e-61 238.4 234 55.1
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 9.5e-61 237.7 234 55.1
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.2e-60 237.3 289 49.5
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 4.7e-60 235.3 218 56.4
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.0e-59 234.2 217 58.1
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 1.4e-59 233.8 231 52.8
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.8e-59 233.4 237 54.4
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 5.2e-59 231.9 236 54.7
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 6.8e-59 231.5 232 54.3
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 6.8e-59 231.5 212 58.5
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 2.6e-58 229.6 215 55.3
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 4.4e-58 228.8 243 52.3
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 9.8e-58 227.6 241 53.5
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 7.0e-56 221.5 239 52.3
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 9.2e-56 221.1 233 53.6
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 2.0e-55 219.9 250 51.2
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 2.0e-55 219.9 287 47.4
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.1e-53 214.2 185 60.0
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 9.5e-53 211.1 203 56.2
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.2e-52 210.7 240 49.2
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 5.2e-51 205.3 233 48.9
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 6.8e-51 204.9 247 51.0
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 2.6e-50 203.0 232 50.4
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.7e-49 200.3 200 55.0
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 2.4e-48 196.4 238 47.5
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 9.2e-48 194.5 271 43.9
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 7.8e-47 191.4 241 47.3
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.3e-46 190.7 171 60.8
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 9.5e-45 184.5 242 45.5
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 1.8e-43 180.3 161 57.8
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 6.8e-43 178.3 244 43.4
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.7e-41 173.7 247 43.7
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 8.3e-41 171.4 233 44.2
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.4e-40 170.6 138 66.7
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 6.6e-38 161.8 138 59.4
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 8.6e-38 161.4 184 49.5
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 1.1e-35 154.5 244 41.0
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.4e-35 153.3 234 41.0
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.5e-34 150.6 138 58.0
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.1e-32 144.4 217 43.8
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.4e-32 144.1 95 72.6
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 7.3e-29 131.7 97 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 6.9e-27 125.2 144 51.4
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 6.4e-25 118.6 142 50.0
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 6.0e-23 112.1 222 38.7
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 6.6e-22 108.6 102 54.9
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.1e-21 107.8 116 50.9
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 4.3e-21 105.9 155 38.1
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.8e-19 100.5 101 52.5
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 6.9e-19 98.6 108 47.2
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 5.8e-18 95.5 135 46.7
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 9.3e-16 88.2 118 44.9
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.5e-15 86.3 137 43.1
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.8e-14 84.0 193 32.6
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.5e-13 80.9 102 43.1
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 9.6e-13 78.2 56 69.6
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.6e-12 77.4 79 53.2
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 3.1e-11 73.2 72 59.7
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.3e-06 57.8 96 37.5
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 3.0e-06 56.6 86 43.0


User provided reference genes

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