Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 0.0e+00 1398.3 776 100.0
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 7.3e-86 322.8 788 37.6
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.9e-62 245.0 742 33.4
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.9e-62 245.0 742 33.4
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 6.7e-39 166.8 177 52.5
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 1.3e-37 162.5 675 30.2
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 8.0e-24 116.7 195 37.9
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 6.7e-23 113.6 310 33.5
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 4.4e-22 110.9 727 24.6
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 4.8e-21 107.5 142 45.8
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.8e-20 105.5 182 39.0
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 9.1e-20 103.2 727 24.5
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 1.2e-19 102.8 142 38.7
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.0e-18 99.8 183 35.5
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.8e-18 97.8 153 35.3
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 3.2e-17 94.7 151 35.1
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 3.2e-17 94.7 727 23.9
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 4.2e-17 94.4 141 36.9
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 4.2e-17 94.4 233 33.0
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 4.2e-17 94.4 141 36.9
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 1.6e-16 92.4 147 40.8
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 4.7e-16 90.9 197 34.5
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 6.1e-16 90.5 370 26.2
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 8.0e-16 90.1 155 36.1
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.0e-15 89.7 151 33.8
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.4e-15 89.4 144 38.2
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.4e-15 89.4 153 35.9
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 1.4e-15 89.4 141 35.5
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.4e-15 89.4 187 34.2
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 1.8e-15 89.0 150 37.3
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 4.0e-15 87.8 154 35.7
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 6.7e-15 87.0 759 24.8
Oeu024236.1 Olea europaea HOM05D012625 ORTHO05D003332 1.5e-14 85.9 370 30.5
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 2.0e-14 85.5 206 35.0
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 2.2e-13 82.0 153 35.3
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 2.8e-13 81.6 109 42.2
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 3.7e-13 81.3 149 33.6
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 3.7e-13 81.3 252 27.4
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 3.7e-13 81.3 166 36.7
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 4.8e-13 80.9 739 27.5
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 4.8e-13 80.9 280 27.9
MSTRG.27123 Avicennia marina HOM05D003520 ORTHO05D003332 6.3e-13 80.5 613 25.9
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 8.3e-13 80.1 164 33.5
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 8.3e-13 80.1 363 24.2
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 1.4e-12 79.3 297 27.3
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 1.8e-12 79.0 153 34.6
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 3.1e-12 78.2 154 31.2
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 5.3e-12 77.4 141 31.2
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 9.1e-12 76.6 207 31.9
Lj8C25T11 Lonicera japonica HOM05D003520 ORTHO05D003332 1.2e-11 76.3 126 41.3
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 1.2e-11 76.3 385 25.2
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.0e-11 75.5 226 27.9
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.7e-11 75.1 294 25.9
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.5e-11 74.3 199 28.6
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 1.7e-10 72.4 783 23.2
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 2.2e-10 72.0 699 24.2
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.8e-10 71.2 136 32.4
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 3.8e-10 71.2 790 21.6
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 5.0e-10 70.9 661 22.2
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 5.0e-10 70.9 261 30.7
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 5.0e-10 70.9 59 52.5
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 5.0e-10 70.9 207 36.7
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 6.5e-10 70.5 278 28.8
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.1e-09 69.7 105 37.1
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.5e-09 68.6 313 28.8
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.5e-09 68.6 378 26.5
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 4.2e-09 67.8 56 51.8
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 5.5e-09 67.4 81 43.2
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 9.4e-09 66.6 333 25.8
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 9.4e-09 66.6 716 24.4
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.2e-08 66.2 335 26.9
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.6e-08 65.9 164 31.7
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.1e-08 65.5 182 28.0
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 2.7e-08 65.1 207 30.9
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 2.7e-08 65.1 688 25.1
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 3.6e-08 64.7 54 57.4
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 4.7e-08 64.3 166 30.7
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.7e-08 64.3 130 32.3
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 6.1e-08 63.9 810 22.1
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 6.1e-08 63.9 308 27.9
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 6.1e-08 63.9 59 45.8
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 8.0e-08 63.5 162 44.4
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 1.0e-07 63.2 209 31.1
Zm00001eb376080 Zea mays HOM05D003520 ORTHO05D003332 1.0e-07 63.2 168 31.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.4e-07 62.8 136 33.1
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.4e-07 62.8 136 33.1
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 1.4e-07 62.8 56 51.8
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.4e-07 62.8 182 28.6
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.4e-07 62.8 796 22.9
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.8e-07 62.4 760 23.8
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.8e-07 62.4 95 41.1
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.3e-07 62.0 170 28.8
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.3e-07 62.0 272 33.1
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 3.0e-07 61.6 435 26.0
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 4.0e-07 61.2 211 29.4
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 4.0e-07 61.2 210 30.0
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 4.0e-07 61.2 182 29.1
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 6.8e-07 60.5 114 34.2
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 6.8e-07 60.5 252 33.7
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 6.8e-07 60.5 55 47.3
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 1.2e-06 59.7 143 32.2
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 1.5e-06 59.3 716 22.8
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.0e-06 58.9 45 55.6
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.6e-06 58.5 127 33.1
DCAR_020242 Daucus carota HOM05D003520 ORTHO05D003332 3.4e-06 58.2 174 29.9
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 3.4e-06 58.2 140 37.1
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.4e-06 58.2 89 39.3
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.4e-06 58.2 699 23.6
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 4.4e-06 57.8 216 27.3
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 5.7e-06 57.4 698 23.6
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 5.7e-06 57.4 52 57.7
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 7.5e-06 57.0 121 31.4
Os04g0273900 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 7.5e-06 57.0 135 31.1
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 7.5e-06 57.0 56 50.0
Zm00001eb048990 Zea mays HOM05D003520 ORTHO05D003332 7.5e-06 57.0 259 25.9
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 7.5e-06 57.0 98 40.8
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 9.8e-06 56.6 118 36.4


User provided reference genes

Program Settings