Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 2278.1 1182 100.0
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1840.9 1189 81.1
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1816.6 1170 81.4
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1756.1 1225 77.6
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1599.3 1203 70.7
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1575.8 1203 70.0
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1575.5 1214 70.0
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1572.4 1199 70.4
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1564.7 1203 69.9
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1539.2 1198 69.5
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1494.2 1206 66.5
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1464.1 1222 65.6
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1456.8 1247 64.2
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1453.0 1199 66.6
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1444.1 1200 66.4
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1440.2 1213 65.0
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1438.3 1212 64.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1436.4 1205 66.4
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1436.0 1220 64.8
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1434.9 1341 60.9
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1428.7 1220 64.4
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1427.2 1248 63.3
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1421.8 1221 63.2
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1417.9 1214 63.9
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1411.4 1221 62.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1407.1 1122 68.0
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1406.7 1209 64.2
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1406.0 1208 64.3
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1403.7 1221 62.5
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1402.1 1223 62.8
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1399.4 1215 63.4
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1397.1 1214 62.4
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1393.3 1212 64.0
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1392.5 1072 69.0
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1384.8 1023 71.5
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1382.1 1209 62.9
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1380.5 1217 63.4
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1379.8 1205 61.5
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1375.1 1229 62.3
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1374.8 1142 64.5
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1373.2 1219 61.8
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1370.5 1235 61.9
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1369.8 1208 62.3
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1367.4 1212 62.3
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1366.7 1230 61.1
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1366.3 1210 61.8
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1360.1 1236 60.7
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1358.2 1211 62.0
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1358.2 1209 62.4
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1357.0 1209 62.4
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1355.9 1231 60.8
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1355.5 1202 61.6
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1353.6 1218 61.9
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1351.7 1209 62.2
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1351.3 1231 60.7
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1347.4 1146 64.0
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1346.6 1231 60.6
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1342.8 1213 60.9
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1340.5 1211 61.9
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1339.7 1215 61.8
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1338.2 1214 61.6
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1337.4 1182 62.0
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1332.0 1207 61.7
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1328.5 1234 60.9
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1328.5 1253 59.9
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1328.5 1253 59.9
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1327.0 1239 60.5
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1325.5 1253 59.8
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1320.1 1182 61.3
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1313.9 1207 61.1
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1313.5 1212 60.6
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1312.7 1184 61.5
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1305.4 1153 61.7
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1304.7 1205 60.9
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1294.3 1182 60.7
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1293.5 1215 59.5
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1292.7 1183 60.6
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1290.0 1403 53.8
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1288.9 1185 60.9
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1288.5 1203 60.1
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1288.5 1203 60.1
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1284.6 1191 59.1
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1283.9 1190 59.4
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1282.3 1206 58.7
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1281.9 1187 60.4
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1280.8 1183 60.7
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1267.3 1182 59.9
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1256.1 1170 60.3
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1255.4 1228 58.3
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1254.6 1207 59.2
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1252.7 1154 59.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1247.3 1231 58.8
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1239.2 1152 60.9
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1238.8 1149 59.7
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1211.4 1142 59.6
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1205.3 1183 58.7
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1116.7 1069 58.4
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1078.2 983 61.6
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 8.1e-312 1073.5 1192 53.8
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.0e-301 1040.4 1169 53.0
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 5.8e-292 1008.1 1183 51.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.7e-289 999.2 758 70.7
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 1.8e-285 986.5 835 64.4
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.1e-282 977.2 1155 49.1
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.4e-269 933.7 1232 47.2
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 3.5e-257 892.5 1133 46.4
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.2e-246 855.1 680 65.7
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.8e-244 848.6 635 71.2
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 1.3e-232 810.8 610 70.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 4.1e-229 799.3 740 58.6
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 3.8e-227 792.7 956 49.3
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 3.9e-224 782.7 1254 41.2
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.3e-213 745.7 670 60.7
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 5.9e-212 742.3 1269 39.2
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.1e-209 733.8 676 59.9
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 7.4e-207 725.3 700 59.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.0e-191 674.1 1159 39.6
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 7.0e-189 665.6 514 68.9
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.2e-185 654.8 688 54.5
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.1e-185 654.1 621 59.1
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 2.8e-182 643.7 598 60.0
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 8.0e-177 625.5 455 72.3
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.2e-175 621.7 454 72.2
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 4.3e-170 603.2 1131 37.6
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 1.9e-165 587.8 430 72.6
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 6.0e-140 503.1 1522 30.6
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 5.5e-125 453.4 385 65.7
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.9e-122 444.9 402 63.9
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 8.8e-99 366.3 355 58.0
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.7e-97 362.1 478 49.2
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.3e-94 352.4 302 61.6
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.0e-86 323.9 271 62.4
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 4.8e-81 307.4 428 44.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 6.3e-73 280.4 279 53.8
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 8.6e-70 270.0 255 62.7
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.6e-70 270.0 398 43.2
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 2.2e-65 255.4 224 58.5
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 6.4e-65 253.8 202 68.3
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 5.0e-62 244.2 239 54.0
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 8.1e-52 210.3 168 68.5
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.0e-47 194.1 218 50.0
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-46 192.2 212 50.9
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 3.0e-46 191.8 159 66.0
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.6e-46 190.7 177 60.5
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.5e-45 186.8 209 50.2
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-44 184.9 210 50.0
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 8.1e-44 183.7 176 54.0
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 1.6e-39 169.5 121 73.6
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-37 162.5 133 58.6
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.3e-37 160.6 134 57.5
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-35 156.4 130 58.5
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.4e-35 156.4 150 52.7
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 2.3e-30 139.0 110 62.7
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-28 132.1 133 55.6
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.1e-28 130.6 111 56.8
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.7e-23 115.5 95 66.3
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.6e-22 110.9 96 65.6
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.5e-21 109.0 92 58.7
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.0e-18 99.4 235 33.6
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 5.8e-18 97.8 83 69.9
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 7.6e-18 97.4 172 40.7
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 6.0e-15 87.8 108 51.9
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 9.6e-13 80.5 190 31.1
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.6e-12 79.7 90 51.1
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.4e-11 75.9 107 48.6
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.0e-11 75.1 64 62.5
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 1.2e-07 63.5 140 37.1
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-07 63.2 134 41.0
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 6.0e-07 61.2 97 46.4
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.0e-06 60.5 72 45.8
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 2.3e-06 59.3 96 36.5


User provided reference genes

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