Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 1.5e-152 542.7 262 100.0
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 2.4e-126 455.7 274 84.3
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 1.0e-116 423.7 277 77.6
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 5.8e-112 407.9 280 74.6
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 4.6e-101 371.7 310 66.8
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 1.3e-95 353.6 288 69.1
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 1.1e-94 350.5 284 66.2
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 5.5e-94 348.2 198 85.4
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 2.1e-93 346.3 291 67.4
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 6.1e-93 344.7 286 67.5
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 1.0e-92 344.0 206 83.0
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 1.0e-92 344.0 272 68.8
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 1.8e-92 343.2 223 78.9
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 3.9e-92 342.0 291 67.0
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 5.1e-92 341.7 286 66.4
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 6.7e-92 341.3 192 88.0
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 8.8e-92 340.9 287 64.8
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 1.1e-91 340.5 277 67.1
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 1.1e-91 340.5 281 65.1
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 3.3e-91 339.0 223 77.1
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 3.3e-91 339.0 224 77.7
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 3.3e-91 339.0 198 82.8
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 5.7e-91 338.2 282 65.6
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 5.7e-91 338.2 219 78.1
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 7.4e-91 337.8 253 70.0
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 7.4e-91 337.8 229 77.3
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 7.4e-91 337.8 228 74.6
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 1.7e-90 336.7 246 72.8
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.7e-90 336.7 282 65.2
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 1.7e-90 336.7 228 75.0
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 3.7e-90 335.5 286 63.6
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 1.1e-89 334.0 192 84.4
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 1.8e-89 333.2 192 84.4
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 1.8e-89 333.2 192 84.4
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.8e-89 333.2 259 69.1
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 1.8e-89 333.2 192 84.4
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 2.4e-89 332.8 199 82.4
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 2.4e-89 332.8 192 85.9
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 4.1e-89 332.0 192 83.3
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 4.1e-89 332.0 192 84.9
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 5.3e-89 331.6 286 64.3
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 5.3e-89 331.6 190 85.3
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 6.9e-89 331.3 200 82.5
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 9.1e-89 330.9 192 84.9
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 1.5e-88 330.1 290 64.5
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 1.5e-88 330.1 229 73.4
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 2.6e-88 329.3 289 60.9
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 3.4e-88 328.9 239 71.1
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 3.4e-88 328.9 204 79.4
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 4.5e-88 328.6 198 79.8
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 4.5e-88 328.6 281 64.4
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 5.9e-88 328.2 234 70.9
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 5.9e-88 328.2 277 64.3
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 1.0e-87 327.4 192 83.9
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 1.3e-87 327.0 191 82.2
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 2.9e-87 325.9 279 65.2
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 2.9e-87 325.9 277 63.9
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 2.9e-87 325.9 195 83.1
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 3.8e-87 325.5 275 63.6
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 5.0e-87 325.1 194 80.4
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 5.0e-87 325.1 193 82.9
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 6.5e-87 324.7 275 64.0
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 8.5e-87 324.3 193 82.9
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 1.4e-86 323.6 306 59.5
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 1.9e-86 323.2 275 63.6
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 1.9e-86 323.2 200 80.0
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 2.5e-86 322.8 284 63.0
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 2.5e-86 322.8 215 76.7
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 3.2e-86 322.4 283 64.3
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 3.2e-86 322.4 257 65.4
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 4.2e-86 322.0 247 69.2
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 5.5e-86 321.6 250 67.6
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 9.4e-86 320.9 201 79.1
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 9.4e-86 320.9 193 81.9
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 9.4e-86 320.9 192 80.7
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 1.2e-85 320.5 270 64.4
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 2.1e-85 319.7 274 63.5
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 2.1e-85 319.7 192 82.3
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 3.6e-85 318.9 227 73.1
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 6.1e-85 318.2 195 80.0
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 1.4e-84 317.0 291 62.9
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 3.0e-84 315.8 259 63.7
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 3.9e-84 315.5 321 55.8
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 5.1e-84 315.1 193 81.9
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 5.1e-84 315.1 193 81.9
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 5.1e-84 315.1 202 78.7
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.1e-83 313.9 262 66.0
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 4.4e-83 312.0 193 79.3
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 5.7e-83 311.6 203 77.3
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 5.7e-83 311.6 192 79.7
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 7.4e-83 311.2 226 71.7
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 7.4e-83 311.2 226 71.7
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 1.7e-82 310.1 288 61.1
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 1.7e-82 310.1 185 81.1
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 6.3e-82 308.1 264 62.9
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 6.3e-82 308.1 219 73.5
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 8.2e-82 307.8 218 73.4
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 1.4e-81 307.0 246 65.4
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 1.2e-80 303.9 179 81.0
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 1.5e-80 303.5 197 77.2
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 2.6e-80 302.8 279 60.9
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 2.6e-80 302.8 220 72.3
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 5.9e-80 301.6 191 79.1
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 7.7e-80 301.2 183 80.9
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 1.0e-79 300.8 198 76.3
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 2.2e-79 299.7 197 76.1
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.2e-79 299.7 182 81.3
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.2e-79 299.7 182 81.3
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.2e-79 299.7 182 81.3
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 2.5e-78 296.2 166 86.7
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 3.2e-78 295.8 181 79.0
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 6.7e-76 288.1 193 74.1
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 8.8e-76 287.7 192 76.0
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 9.7e-75 284.3 177 80.8
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 6.3e-74 281.6 273 55.7
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 1.8e-73 280.0 255 62.4
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 2.6e-72 276.2 214 67.8
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 2.6e-72 276.2 155 87.7
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 4.2e-70 268.9 146 89.0
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 5.2e-68 261.9 180 69.4
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 3.4e-67 259.2 384 42.7
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 4.4e-67 258.8 181 68.5
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 1.3e-66 257.3 191 69.6
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.7e-66 256.9 149 85.2
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 3.7e-66 255.8 152 82.2
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 2.0e-64 250.0 167 73.1
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 3.6e-61 239.2 168 70.2
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 4.7e-61 238.8 222 64.0
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 1.0e-60 237.7 188 62.2
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 1.7e-58 230.3 233 58.4
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 1.7e-58 230.3 256 53.1
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 2.7e-56 223.0 126 85.7
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 7.7e-56 221.5 164 72.0
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 3.6e-53 212.6 186 60.2
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 8.0e-53 211.5 176 56.2
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 2.3e-52 209.9 143 72.0
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 9.8e-51 204.5 198 55.1
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 2.1e-45 186.8 171 55.6
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 1.5e-43 180.6 221 49.8
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.7e-40 169.9 127 70.9
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.7e-40 169.9 127 70.9
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 7.3e-38 161.8 179 44.1
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 1.2e-37 161.0 135 62.2
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 4.7e-37 159.1 100 77.0
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 1.4e-33 147.5 180 40.0
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 1.2e-32 144.4 132 56.1
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 1.5e-30 137.5 146 51.4
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 9.5e-30 134.8 94 73.4
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 3.6e-29 132.9 169 49.7
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 8.1e-29 131.7 71 87.3
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 1.1e-28 131.3 163 53.4
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 1.5e-27 127.5 97 66.0
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 2.1e-24 117.1 93 65.6
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 4.6e-24 115.9 133 49.6
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 1.1e-22 111.3 104 57.7
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 4.3e-22 109.4 93 66.7
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.6e-21 107.5 83 67.5
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 1.5e-19 100.9 81 64.2
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 4.4e-19 99.4 67 70.1
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 3.8e-18 96.3 96 54.2
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 1.4e-17 94.4 85 58.8
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 4.2e-17 92.8 59 76.3
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 9.3e-17 91.7 86 60.5
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 4.3e-14 82.8 53 73.6
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 3.6e-13 79.7 55 67.3
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 1.1e-12 78.2 40 85.0
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 3.1e-12 76.6 41 85.4
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 3.1e-12 76.6 41 85.4
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 4.6e-08 62.8 54 61.1


User provided reference genes

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