Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00960 Striga asiatica HOM05D004334 ORTHO05D004763 2.6e-139 498.8 266 100.0
SGA_v2.0_scaffold108G30985 Striga asiatica HOM05D004334 ORTHO05D004763 5.2e-108 394.8 295 73.9
MSTRG.2739 Avicennia marina HOM05D004334 ORTHO05D004763 8.3e-90 334.3 345 59.1
Migut.H02192 Erythranthe guttata HOM05D004334 ORTHO05D004763 1.4e-89 333.6 345 54.8
Oeu012549.1 Olea europaea HOM05D004334 ORTHO05D004763 4.0e-84 315.5 349 51.0
Cc07_g11490 Coffea canephora HOM05D004334 ORTHO05D004763 2.4e-81 306.2 349 49.6
Oeu039717.1 Olea europaea HOM05D004334 ORTHO05D004763 1.2e-80 303.9 349 50.1
CSS0027377 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 3.8e-74 282.3 341 48.4
TWI73G1167 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 5.4e-73 278.5 342 48.0
CSS0049695 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 2.3e-71 273.1 339 46.3
CiPaw.08G179800 Carya illinoinensis HOM05D004334 ORTHO05D004763 5.6e-70 268.5 341 46.9
Actinidia17393 Actinidia chinensis HOM05D004334 ORTHO05D004763 9.6e-70 267.7 332 50.9
CAN.G890.9 Capsicum annuum HOM05D004334 ORTHO05D004763 9.6e-70 267.7 350 50.0
Potri.005G104700 Populus trichocarpa HOM05D004334 ORTHO05D004763 2.1e-69 266.5 331 48.0
vmacro18446 Vaccinium macrocarpon HOM05D004334 ORTHO05D004763 3.6e-69 265.8 335 45.4
MD15G1235400 Malus domestica HOM05D004334 ORTHO05D004763 6.2e-69 265.0 340 45.0
FvH4_1g10780 Fragaria vesca HOM05D004334 ORTHO05D004763 1.8e-68 263.5 342 47.1
Cfa007045 Carpinus fangiana HOM05D004334 ORTHO05D004763 2.4e-68 263.1 332 48.8
Prupe.7G177700 Prunus persica HOM05D004334 ORTHO05D004763 6.9e-68 261.5 334 49.4
TWI53G1416 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 9.0e-68 261.2 307 52.8
MD02G1121800 Malus domestica HOM05D004334 ORTHO05D004763 2.0e-67 260.0 340 49.4
Sopen02g027910 Solanum pennellii HOM05D004334 ORTHO05D004763 4.4e-67 258.8 348 48.6
PGSC0003DMG400001577 Solanum tuberosum HOM05D004334 ORTHO05D004763 7.6e-67 258.1 348 48.6
Haze_03684 Corylus avellana HOM05D004334 ORTHO05D004763 9.9e-67 257.7 346 47.7
Rhsim08G0028900 Rhododendron simsii HOM05D004334 ORTHO05D004763 9.9e-67 257.7 364 42.0
TAR376G1081 Trochodendron aralioides HOM05D004334 ORTHO05D004763 9.9e-67 257.7 340 43.2
Ciclev10025980m.g Citrus clementina HOM05D004334 ORTHO05D004763 1.7e-66 256.9 340 47.9
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla HOM05D004334 ORTHO05D004763 8.4e-66 254.6 342 43.9
Gorai.003G004400 Gossypium raimondii HOM05D004334 ORTHO05D004763 1.1e-65 254.2 346 47.4
Gohir.D03G004200 Gossypium hirsutum HOM05D004334 ORTHO05D004763 2.4e-65 253.1 346 47.4
Atru.chr3.934 Acer truncatum HOM05D004334 ORTHO05D004763 7.1e-65 251.5 342 48.2
Gorai.007G189900 Gossypium raimondii HOM05D004334 ORTHO05D004763 1.2e-64 250.8 342 44.2
Gohir.D11G178000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 1.6e-64 250.4 339 44.0
Solyc02g083150.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 2.1e-64 250.0 349 48.1
CiPaw.07G005200 Carya illinoinensis HOM05D004334 ORTHO05D004763 2.7e-64 249.6 341 45.5
Thecc.01G009500 Theobroma cacao HOM05D004334 ORTHO05D004763 2.7e-64 249.6 343 47.2
Gohir.A11G171000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 6.0e-64 248.4 339 44.0
RcHm_v2.0_Chr2g0097961 Rosa chinensis HOM05D004334 ORTHO05D004763 1.7e-63 246.9 342 45.0
Eucgr.I02283 Eucalyptus grandis HOM05D004334 ORTHO05D004763 3.0e-63 246.1 339 48.1
ClCG01G020710 Citrullus lanatus HOM05D004334 ORTHO05D004763 5.1e-63 245.4 349 43.3
MELO3C007955.2 Cucumis melo HOM05D004334 ORTHO05D004763 6.6e-63 245.0 339 46.0
Nn6g31831 Nelumbo nucifera HOM05D004334 ORTHO05D004763 6.6e-63 245.0 342 43.3
CsaV3_6G047640 Cucumis sativus L. HOM05D004334 ORTHO05D004763 8.7e-63 244.6 339 46.6
Manes.03G080400 Manihot esculenta HOM05D004334 ORTHO05D004763 2.5e-62 243.0 340 45.3
Peaxi162Scf00300g00517 Petunia axillaris HOM05D004334 ORTHO05D004763 5.6e-62 241.9 332 48.8
Aqoxy6G01836 Aquilegia oxysepala HOM05D004334 ORTHO05D004763 1.6e-61 240.4 347 40.9
Lsat_1_v5_gn_4_143501 Lactuca sativa HOM05D004334 ORTHO05D004763 2.1e-61 240.0 339 46.6
Phvul.002G112900 Phaseolus vulgaris HOM05D004334 ORTHO05D004763 2.4e-60 236.5 341 44.0
FAN23G2490 Fragaria x ananassa HOM05D004334 ORTHO05D004763 5.3e-60 235.3 334 46.1
MBI05_g39718_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.2e-59 234.2 342 41.8
Actinidia02363 Actinidia chinensis HOM05D004334 ORTHO05D004763 2.0e-59 233.4 277 48.0
CAN.G23.17 Capsicum annuum HOM05D004334 ORTHO05D004763 3.4e-59 232.6 347 41.8
HanXRQChr09g0256961 Helianthus annuus HOM05D004334 ORTHO05D004763 4.5e-59 232.3 333 47.4
CSS0034111 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 5.8e-59 231.9 280 47.9
Glyma.11G082600 Glycine max HOM05D004334 ORTHO05D004763 5.8e-59 231.9 339 44.2
ATR0661G230 Amborella trichopoda HOM05D004334 ORTHO05D004763 7.6e-59 231.5 344 42.2
FvH4_6g14950 Fragaria vesca HOM05D004334 ORTHO05D004763 7.6e-59 231.5 342 46.2
FAN14G2747 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.6e-59 231.5 342 46.2
Lalb_Chr05g0212061 Lupinus albus HOM05D004334 ORTHO05D004763 1.3e-58 230.7 341 44.6
FAN09G1010 Fragaria x ananassa HOM05D004334 ORTHO05D004763 3.8e-58 229.2 342 43.0
FAN09G3278 Fragaria x ananassa HOM05D004334 ORTHO05D004763 3.8e-58 229.2 342 43.0
Lj4A228G17 Lonicera japonica HOM05D004334 ORTHO05D004763 1.9e-57 226.9 231 57.1
PGR119G0893 Punica granatum HOM05D004334 ORTHO05D004763 3.2e-57 226.1 329 44.7
Hund03662 Selenicereus undatus HOM05D004334 ORTHO05D004763 7.1e-57 224.9 356 37.6
Duzib147G0009 Durio zibethinus HOM05D004334 ORTHO05D004763 1.2e-56 224.2 286 47.9
Gohir.A02G175700 Gossypium hirsutum HOM05D004334 ORTHO05D004763 2.1e-56 223.4 329 45.9
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 2.7e-56 223.0 327 42.2
Nitab4.5_0000188g0270 Nicotiana tabacum HOM05D004334 ORTHO05D004763 3.5e-56 222.6 318 47.2
Nn5g30900 Nelumbo nucifera HOM05D004334 ORTHO05D004763 7.9e-56 221.5 295 44.1
FAN19G0005 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.0e-55 221.1 342 42.7
arahy.Tifrunner.gnm1.ann1.R6TSSQ Arachis hypogaea HOM05D004334 ORTHO05D004763 5.1e-55 218.8 381 37.0
Lj2g0016931 Lotus japonicus HOM05D004334 ORTHO05D004763 5.1e-55 218.8 337 42.7
PSO675G0891 Papaver somniferum HOM05D004334 ORTHO05D004763 6.7e-55 218.4 330 39.1
Carub.0005s1777 Capsella rubella HOM05D004334 ORTHO05D004763 1.1e-54 217.6 347 41.5
Ca_24954_v3 Cicer arietinum L. HOM05D004334 ORTHO05D004763 1.5e-54 217.2 340 39.4
FAN05G4181 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.5e-54 217.2 342 41.8
PSO541G2607 Papaver somniferum HOM05D004334 ORTHO05D004763 1.9e-54 216.9 330 38.8
Thhalv10010516m.g Eutrema salsugineum HOM05D004334 ORTHO05D004763 9.6e-54 214.5 347 42.4
Solyc02g061810.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 2.8e-53 213.0 326 40.2
Sopen02g012850 Solanum pennellii HOM05D004334 ORTHO05D004763 2.8e-53 213.0 327 39.8
unitig_699.g19572 Utricularia gibba HOM05D004334 ORTHO05D004763 3.7e-53 212.6 253 46.2
HanXRQChr15g0487491 Helianthus annuus HOM05D004334 ORTHO05D004763 1.1e-52 211.1 331 44.1
THA.LOC104821351 Tarenaya hassleriana HOM05D004334 ORTHO05D004763 1.4e-52 210.7 344 42.4
AT3G51390 Arabidopsis thaliana HOM05D004334 ORTHO05D004763 1.8e-52 210.3 347 42.1
AL5G31840 Arabidopsis lyrata HOM05D004334 ORTHO05D004763 2.4e-52 209.9 347 42.4
PGR102G0214 Punica granatum HOM05D004334 ORTHO05D004763 3.1e-52 209.5 340 40.0
SalBow3G0047 Salvia bowleyana HOM05D004334 ORTHO05D004763 5.3e-52 208.8 340 42.1
Potri.007G060100 Populus trichocarpa HOM05D004334 ORTHO05D004763 6.9e-52 208.4 338 39.6
Sabra05G0086000 Salix brachista HOM05D004334 ORTHO05D004763 2.6e-51 206.5 420 37.9
DCAR_011587 Daucus carota HOM05D004334 ORTHO05D004763 4.5e-51 205.7 280 50.0
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 9.9e-51 204.5 325 42.8
Medtr5g023230 Medicago truncatula HOM05D004334 ORTHO05D004763 1.3e-50 204.1 332 38.3
Ah.02g129060 Amaranthus hybridus HOM05D004334 ORTHO05D004763 8.4e-50 201.4 328 41.8
TPR.G25124 Trifolium pratense HOM05D004334 ORTHO05D004763 5.5e-49 198.7 332 39.5
EL10Ac6g13347 Beta vulgaris HOM05D004334 ORTHO05D004763 7.1e-49 198.4 341 37.0
Nitab4.5_0004994g0030 Nicotiana tabacum HOM05D004334 ORTHO05D004763 7.9e-48 194.9 356 38.5
BcaNung00388 Brassica carinata HOM05D004334 ORTHO05D004763 1.0e-47 194.5 326 42.6
A09p44490 Brassica napus HOM05D004334 ORTHO05D004763 1.8e-47 193.7 351 39.3
BraA09t39907Z Brassica rapa HOM05D004334 ORTHO05D004763 1.8e-47 193.7 351 39.3
FAN28G1575 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.3e-47 193.4 137 70.8
Sp5g10830 Schrenkiella parvula HOM05D004334 ORTHO05D004763 3.0e-47 193.0 347 40.3
BolC8t50281H Brassica oleracea HOM05D004334 ORTHO05D004763 3.9e-47 192.6 351 39.6
CARHR160990 Cardamine hirsuta HOM05D004334 ORTHO05D004763 5.1e-47 192.2 349 40.4
Dinv08539 Davidia involucrata HOM05D004334 ORTHO05D004763 5.1e-47 192.2 288 45.1
MBI08_g35872_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.5e-46 190.7 319 41.4
BcaB01g00520 Brassica carinata HOM05D004334 ORTHO05D004763 3.3e-46 189.5 350 39.4
BraA01t02255Z Brassica rapa HOM05D004334 ORTHO05D004763 4.3e-46 189.1 340 40.9
C08p26670 Brassica napus HOM05D004334 ORTHO05D004763 7.4e-46 188.3 350 38.9
FAN26G3296 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.4e-46 188.3 137 68.6
QL06p052483 Quercus lobata HOM05D004334 ORTHO05D004763 1.6e-45 187.2 135 63.7
Eucgr.J02517 Eucalyptus grandis HOM05D004334 ORTHO05D004763 3.7e-45 186.0 329 40.7
arahy.Tifrunner.gnm1.ann1.106C79 Arachis hypogaea HOM05D004334 ORTHO05D004763 2.6e-43 179.9 293 38.6
Sabra07G0050700 Salix brachista HOM05D004334 ORTHO05D004763 4.5e-43 179.1 158 56.3
Lsat_1_v5_gn_2_75001 Lactuca sativa HOM05D004334 ORTHO05D004763 6.5e-42 175.3 300 36.3
Peaxi162Scf00439g00007 Petunia axillaris HOM05D004334 ORTHO05D004763 1.9e-38 163.7 275 37.8
Nitab4.5_0001310g0110 Nicotiana tabacum HOM05D004334 ORTHO05D004763 9.7e-38 161.4 128 69.5
unitig_27.g25346 Utricularia gibba HOM05D004334 ORTHO05D004763 1.6e-37 160.6 139 56.1
Os12g0480000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 2.2e-37 160.2 318 33.6
Zm00001eb187020 Zea mays HOM05D004334 ORTHO05D004763 6.3e-37 158.7 203 41.4
BcaNung05551 Brassica carinata HOM05D004334 ORTHO05D004763 1.1e-36 157.9 233 44.2
Zm00001eb250140 Zea mays HOM05D004334 ORTHO05D004763 1.4e-36 157.5 203 38.9
SEGI_01463 Sequoiadendron giganteum HOM05D004334 ORTHO05D004763 2.4e-36 156.8 137 56.2
CDE02G4661 Ceratophyllum demersum HOM05D004334 ORTHO05D004763 2.9e-34 149.8 287 39.0
Nitab4.5_0005413g0010 Nicotiana tabacum HOM05D004334 ORTHO05D004763 5.0e-34 149.1 297 42.4
BcaC09g50093 Brassica carinata HOM05D004334 ORTHO05D004763 3.2e-33 146.4 298 39.3
A01p23480 Brassica napus HOM05D004334 ORTHO05D004763 3.2e-33 146.4 138 60.9
C01p29130 Brassica napus HOM05D004334 ORTHO05D004763 3.2e-33 146.4 220 46.4
Dinv40159 Davidia involucrata HOM05D004334 ORTHO05D004763 2.7e-32 143.3 237 37.6
Ah.03g134170 Amaranthus hybridus HOM05D004334 ORTHO05D004763 3.0e-31 139.8 201 39.3
Potri.005G104800 Populus trichocarpa HOM05D004334 ORTHO05D004763 3.9e-31 139.4 232 37.9
BolC1t02844H Brassica oleracea HOM05D004334 ORTHO05D004763 1.5e-30 137.5 302 37.1
Os04g0562000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 1.9e-30 137.1 137 46.7
Pp3c11_17220 Physcomitrium patens HOM05D004334 ORTHO05D004763 6.9e-28 128.6 128 48.4
Pp3c2_20610 Physcomitrium patens HOM05D004334 ORTHO05D004763 1.3e-26 124.4 135 48.9
Sed0027006 Sechium edule HOM05D004334 ORTHO05D004763 3.9e-23 112.8 233 33.5
Pp3c1_15780 Physcomitrium patens HOM05D004334 ORTHO05D004763 5.7e-22 109.0 128 43.8
QL06p052479 Quercus lobata HOM05D004334 ORTHO05D004763 3.7e-21 106.3 156 39.7
FAN26G1367 Fragaria x ananassa HOM05D004334 ORTHO05D004763 8.2e-21 105.1 157 43.3
FAN02G4027 Fragaria x ananassa HOM05D004334 ORTHO05D004763 3.1e-20 103.2 243 35.4
SMO347G0399 Selaginella moellendorffii HOM05D004334 ORTHO05D004763 2.6e-19 100.1 139 41.0
COL.COLO4_22515 Corchorus olitorius HOM05D004334 ORTHO05D004763 1.3e-18 97.8 76 81.6
arahy.Tifrunner.gnm1.ann1.65IKEQ Arachis hypogaea HOM05D004334 ORTHO05D004763 2.2e-18 97.1 241 29.5
PGSC0003DMG402008678 Solanum tuberosum HOM05D004334 ORTHO05D004763 2.2e-18 97.1 60 73.3
Sc03g0003810 Simmondsia chinensis HOM05D004334 ORTHO05D004763 8.5e-18 95.1 224 30.4
Cpa.g.sc6.335 Carica papaya HOM05D004334 ORTHO05D004763 9.4e-17 91.7 127 44.1
arahy.Tifrunner.gnm1.ann1.5JBS04 Arachis hypogaea HOM05D004334 ORTHO05D004763 1.2e-16 91.3 234 29.5
Mapoly0218s0003 Marchantia polymorpha HOM05D004334 ORTHO05D004763 1.6e-16 90.9 120 36.7
Psat2g151080 Pisum sativum HOM05D004334 ORTHO05D004763 1.6e-16 90.9 229 26.6
VMungo1215G1979 Vigna mungo HOM05D004334 ORTHO05D004763 2.2e-13 80.5 191 31.4
AUR62026202 Chenopodium quinoa HOM05D004334 ORTHO05D004763 1.8e-12 77.4 166 33.7
AUR62026391 Chenopodium quinoa HOM05D004334 ORTHO05D004763 2.9e-10 70.1 160 31.9
PRCOL_00005340 Prasinoderma coloniale HOM05D004334 ORTHO05D004763 3.2e-09 66.6 81 42.0
QL10p037295 Quercus lobata HOM05D004334 ORTHO05D004763 1.2e-08 64.7 94 41.5
Actinidia22928 Actinidia chinensis HOM05D004334 ORTHO05D004763 6.1e-08 62.4 79 44.3
MCO11G403 Micromonas commoda HOM05D000571 ORTHO05D004763 5.2e-07 59.3 104 31.7
AagrBONN_evm.TU.Sc2ySwM_117.683 Anthoceros agrestis HOM05D000571 ORTHO05D004763 6.7e-07 58.9 80 37.5
MBI08_g09580_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 8.8e-07 58.5 49 53.1
Sabra07G0050800 Salix brachista HOM05D004334 ORTHO05D004763 7.5e-06 55.5 39 64.1


User provided reference genes

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