Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00942 Striga asiatica HOM05D003854 ORTHO05D004415 7.7e-197 690.3 342 100.0
Migut.H02258 Erythranthe guttata HOM05D003854 ORTHO05D004415 1.2e-136 490.3 321 76.0
MSTRG.16879 Avicennia marina HOM05D003854 ORTHO05D004415 3.2e-126 455.7 316 72.2
SalBow3G0187 Salvia bowleyana HOM05D003854 ORTHO05D004415 8.4e-119 431.0 332 63.9
Oeu060416.1 Olea europaea HOM05D003854 ORTHO05D004415 7.6e-112 407.9 310 63.2
Rhsim05G0067900 Rhododendron simsii HOM05D003854 ORTHO05D004415 1.7e-111 406.8 313 64.5
Solyc01g110460.4 Solanum lycopersicum HOM05D003854 ORTHO05D004415 2.2e-111 406.4 315 63.5
Sopen01g052590 Solanum pennellii HOM05D003854 ORTHO05D004415 3.8e-111 405.6 315 63.5
Cc02_g16850 Coffea canephora HOM05D003854 ORTHO05D004415 7.9e-109 397.9 317 62.5
vmacro17417 Vaccinium macrocarpon HOM05D003854 ORTHO05D004415 7.9e-109 397.9 311 62.4
Actinidia20473 Actinidia chinensis HOM05D003854 ORTHO05D004415 3.0e-108 396.0 315 62.5
COL.COLO4_10619 Corchorus olitorius HOM05D003854 ORTHO05D004415 2.5e-107 392.9 316 62.7
Atru.chr5.3170 Acer truncatum HOM05D003854 ORTHO05D004415 1.6e-106 390.2 311 61.1
QL11p046566 Quercus lobata HOM05D003854 ORTHO05D004415 1.6e-106 390.2 310 62.3
Nn5g29249 Nelumbo nucifera HOM05D003854 ORTHO05D004415 4.8e-106 388.7 310 60.6
Lsat_1_v5_gn_3_44581 Lactuca sativa HOM05D003854 ORTHO05D004415 5.3e-105 385.2 311 61.1
CAN.G170.108 Capsicum annuum HOM05D003854 ORTHO05D004415 9.0e-105 384.4 354 56.5
Ciclev10028796m.g Citrus clementina HOM05D003854 ORTHO05D004415 1.5e-104 383.6 310 60.6
Hma1.2p1_0218F.1_g092290 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 1.5e-104 383.6 316 59.5
GSVIVG01024163001 Vitis vinifera HOM05D003854 ORTHO05D004415 1.5e-104 383.6 310 61.9
Hma1.2p1_0066F.1_g035740 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 3.4e-104 382.5 310 60.3
TAR376G0190 Trochodendron aralioides HOM05D003854 ORTHO05D004415 3.4e-104 382.5 310 60.0
ECA248G3380 Erigeron canadensis HOM05D003854 ORTHO05D004415 1.3e-103 380.6 309 59.5
Eucgr.G01738 Eucalyptus grandis HOM05D003854 ORTHO05D004415 2.2e-103 379.8 317 60.9
PGR042G3425 Punica granatum HOM05D003854 ORTHO05D004415 2.2e-103 379.8 322 58.1
Duzib248G1248 Durio zibethinus HOM05D003854 ORTHO05D004415 2.9e-103 379.4 316 59.8
CANSAT11G1548 Cannabis sativa HOM05D003854 ORTHO05D004415 3.8e-103 379.0 316 59.5
THA.LOC104807290 Tarenaya hassleriana HOM05D003854 ORTHO05D004415 4.9e-103 378.6 313 59.7
HanXRQChr15g0478351 Helianthus annuus HOM05D003854 ORTHO05D004415 1.4e-102 377.1 309 59.5
Potri.004G163600 Populus trichocarpa HOM05D003854 ORTHO05D004415 1.9e-102 376.7 311 61.1
Lj5A188T38 Lonicera japonica HOM05D003854 ORTHO05D004415 5.5e-102 375.2 345 57.1
ECA246G0289 Erigeron canadensis HOM05D003854 ORTHO05D004415 7.1e-102 374.8 308 60.7
CiPaw.06G127600 Carya illinoinensis HOM05D003854 ORTHO05D004415 9.3e-102 374.4 313 59.7
MD05G1054700 Malus domestica HOM05D003854 ORTHO05D004415 1.2e-101 374.0 316 59.8
Prupe.8G083500 Prunus persica HOM05D003854 ORTHO05D004415 1.2e-101 374.0 310 61.9
Haze_02230 Corylus avellana HOM05D003854 ORTHO05D004415 2.7e-101 372.9 310 59.7
Sed0011434 Sechium edule HOM05D003854 ORTHO05D004415 4.6e-101 372.1 316 58.5
Aqoxy6G02342 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 6.0e-101 371.7 310 58.7
arahy.Tifrunner.gnm1.ann1.3VNM1Z Arachis hypogaea HOM05D003854 ORTHO05D004415 5.1e-100 368.6 309 58.3
MELO3C002788.2 Cucumis melo HOM05D003854 ORTHO05D004415 5.1e-100 368.6 316 58.2
Potri.009G125200 Populus trichocarpa HOM05D003854 ORTHO05D004415 5.1e-100 368.6 311 59.8
MD10G1062200 Malus domestica HOM05D003854 ORTHO05D004415 8.7e-100 367.9 316 59.2
Cpa.g.sc150.10 Carica papaya HOM05D003854 ORTHO05D004415 2.5e-99 366.3 314 56.4
ClCG02G004480 Citrullus lanatus HOM05D003854 ORTHO05D004415 3.3e-99 365.9 316 58.2
Thecc.01G021700 Theobroma cacao HOM05D003854 ORTHO05D004415 3.3e-99 365.9 314 58.3
TPR.G28160 Trifolium pratense HOM05D003854 ORTHO05D004415 3.3e-99 365.9 311 59.8
AUR62016846 Chenopodium quinoa HOM05D003854 ORTHO05D004415 4.3e-99 365.5 313 58.1
CsaV3_7G000470 Cucumis sativus L. HOM05D003854 ORTHO05D004415 4.3e-99 365.5 316 59.2
GSVIVG01018810001 Vitis vinifera HOM05D003854 ORTHO05D004415 5.7e-99 365.2 316 57.0
Nitab4.5_0005266g0010 Nicotiana tabacum HOM05D003854 ORTHO05D004415 7.4e-99 364.8 315 59.7
EL10Ac9g21623 Beta vulgaris HOM05D003854 ORTHO05D004415 9.7e-99 364.4 316 57.9
BolC7t41138H Brassica oleracea HOM05D003854 ORTHO05D004415 9.7e-99 364.4 316 57.0
Ca_20939_v3 Cicer arietinum L. HOM05D003854 ORTHO05D004415 1.6e-98 363.6 331 56.5
BcaB03g16370 Brassica carinata HOM05D003854 ORTHO05D004415 2.2e-98 363.2 316 57.3
Thecc.02G073800 Theobroma cacao HOM05D003854 ORTHO05D004415 3.7e-98 362.5 316 57.9
arahy.Tifrunner.gnm1.ann1.QESS4Q Arachis hypogaea HOM05D003854 ORTHO05D004415 8.2e-98 361.3 309 57.0
Lalb_Chr01g0002121 Lupinus albus HOM05D003854 ORTHO05D004415 8.2e-98 361.3 309 58.6
RcHm_v2.0_Chr6g0268341 Rosa chinensis HOM05D003854 ORTHO05D004415 1.1e-97 360.9 311 59.5
Sp3g29800 Schrenkiella parvula HOM05D003854 ORTHO05D004415 1.4e-97 360.5 317 57.1
C07p07190 Brassica napus HOM05D003854 ORTHO05D004415 3.1e-97 359.4 320 56.6
COL.COLO4_21950 Corchorus olitorius HOM05D003854 ORTHO05D004415 3.1e-97 359.4 321 55.5
Thhalv10022773m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 3.1e-97 359.4 317 58.0
Gohir.A02G169600 Gossypium hirsutum HOM05D003854 ORTHO05D004415 4.1e-97 359.0 315 55.6
Gorai.003G010800 Gossypium raimondii HOM05D003854 ORTHO05D004415 4.1e-97 359.0 315 55.2
Gohir.D03G010400 Gossypium hirsutum HOM05D003854 ORTHO05D004415 9.0e-97 357.8 323 54.5
arahy.Tifrunner.gnm1.ann1.JJ9I6U Arachis hypogaea HOM05D003854 ORTHO05D004415 2.6e-96 356.3 309 56.0
Gorai.011G293600 Gossypium raimondii HOM05D003854 ORTHO05D004415 3.4e-96 355.9 315 56.8
Medtr4g072070 Medicago truncatula HOM05D003854 ORTHO05D004415 3.4e-96 355.9 311 58.2
Sp3g29790 Schrenkiella parvula HOM05D003854 ORTHO05D004415 3.4e-96 355.9 316 56.6
Psat7g139560 Pisum sativum HOM05D003854 ORTHO05D004415 4.5e-96 355.5 314 57.3
FAN15G1017 Fragaria x ananassa HOM05D003854 ORTHO05D004415 5.9e-96 355.1 318 57.2
VMungo1127G2166 Vigna mungo HOM05D003854 ORTHO05D004415 5.9e-96 355.1 334 53.9
Aa31LG8G13840 Aethionema arabicum HOM05D003854 ORTHO05D004415 1.3e-95 354.0 316 56.0
AL3G49110 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 1.3e-95 354.0 320 55.9
Duzib187G0007 Durio zibethinus HOM05D003854 ORTHO05D004415 1.7e-95 353.6 315 58.1
FvH4_2g10640 Fragaria vesca HOM05D003854 ORTHO05D004415 1.7e-95 353.6 318 56.9
Phvul.011G038300 Phaseolus vulgaris HOM05D003854 ORTHO05D004415 2.9e-95 352.8 309 56.3
AT2G16530 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 5.0e-95 352.1 321 55.5
PSO541G5287 Papaver somniferum HOM05D003854 ORTHO05D004415 5.0e-95 352.1 313 58.5
AL6G49210 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 6.5e-95 351.7 320 55.3
Gohir.A10G241100 Gossypium hirsutum HOM05D003854 ORTHO05D004415 6.5e-95 351.7 315 56.2
FAN27G2026 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.1e-94 350.9 318 56.9
Glyma.11G110300 Glycine max HOM05D003854 ORTHO05D004415 1.4e-94 350.5 324 53.7
arahy.Tifrunner.gnm1.ann1.29MT7J Arachis hypogaea HOM05D003854 ORTHO05D004415 1.9e-94 350.1 309 55.0
Sabra09G0096200 Salix brachista HOM05D003854 ORTHO05D004415 1.9e-94 350.1 311 57.6
PSO675G2881 Papaver somniferum HOM05D003854 ORTHO05D004415 2.5e-94 349.7 313 58.5
Carub.0003s3031 Capsella rubella HOM05D003854 ORTHO05D004415 5.5e-94 348.6 320 55.0
Manes.04G064400 Manihot esculenta HOM05D003854 ORTHO05D004415 5.5e-94 348.6 317 56.8
CARHR106750 Cardamine hirsuta HOM05D003854 ORTHO05D004415 7.2e-94 348.2 317 57.1
BcaC06g36152 Brassica carinata HOM05D003854 ORTHO05D004415 9.3e-94 347.8 316 55.1
Hund00184 Selenicereus undatus HOM05D003854 ORTHO05D004415 1.2e-93 347.4 288 59.4
Aa31LG10G12850 Aethionema arabicum HOM05D003854 ORTHO05D004415 2.7e-93 346.3 316 55.7
TWI38G0305 Tripterygium wilfordii HOM05D003854 ORTHO05D004415 2.7e-93 346.3 315 55.9
MBI19_g04330_MAGBIO Magnolia biondii HOM05D003854 ORTHO05D004415 4.6e-93 345.5 317 55.8
arahy.Tifrunner.gnm1.ann1.E6R97N Arachis hypogaea HOM05D003854 ORTHO05D004415 1.8e-92 343.6 309 54.4
Hund00176 Selenicereus undatus HOM05D003854 ORTHO05D004415 1.8e-92 343.6 302 58.3
Lj3g0001283 Lotus japonicus HOM05D003854 ORTHO05D004415 5.1e-92 342.0 339 51.9
Aqoxy3G00105 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 1.9e-91 340.1 311 57.6
Duzib147G1035 Durio zibethinus HOM05D003854 ORTHO05D004415 5.7e-91 338.6 367 49.3
FAN24G1697 Fragaria x ananassa HOM05D003854 ORTHO05D004415 3.1e-89 332.8 308 55.8
Thhalv10000231m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 2.0e-88 330.1 316 54.1
A03p45880 Brassica napus HOM05D003854 ORTHO05D004415 7.7e-88 328.2 314 54.8
CiPaw.05G074000 Carya illinoinensis HOM05D003854 ORTHO05D004415 2.9e-87 326.2 295 56.9
BraA09t36743Z Brassica rapa HOM05D003854 ORTHO05D004415 8.5e-87 324.7 317 53.3
BcaC01g03007 Brassica carinata HOM05D003854 ORTHO05D004415 1.4e-86 323.9 314 53.8
C03p57250 Brassica napus HOM05D003854 ORTHO05D004415 1.4e-86 323.9 314 53.8
Dinv41992 Davidia involucrata HOM05D003854 ORTHO05D004415 1.4e-86 323.9 231 66.7
Gohir.D10G253300 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.4e-86 323.9 273 59.0
AT1G72590 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 1.6e-85 320.5 317 53.3
BraA03t13718Z Brassica rapa HOM05D003854 ORTHO05D004415 1.8e-84 317.0 335 51.3
Thecc.10G037600 Theobroma cacao HOM05D003854 ORTHO05D004415 3.0e-84 316.2 317 54.9
A09p11030 Brassica napus HOM05D003854 ORTHO05D004415 8.8e-84 314.7 317 52.4
Nitab4.5_0008276g0050 Nicotiana tabacum HOM05D003854 ORTHO05D004415 2.0e-83 313.5 308 54.5
BolC9t54197H Brassica oleracea HOM05D003854 ORTHO05D004415 4.4e-83 312.4 318 52.5
BraA07t28241Z Brassica rapa HOM05D003854 ORTHO05D004415 4.4e-83 312.4 316 50.6
Eucgr.H01470 Eucalyptus grandis HOM05D003854 ORTHO05D004415 5.7e-83 312.0 236 64.0
C09p13040 Brassica napus HOM05D003854 ORTHO05D004415 7.4e-83 311.6 317 52.1
BcaC04g23013 Brassica carinata HOM05D003854 ORTHO05D004415 9.7e-83 311.2 317 52.1
ATR0149G029 Amborella trichopoda HOM05D003854 ORTHO05D004415 3.7e-82 309.3 317 51.1
A03p45890 Brassica napus HOM05D003854 ORTHO05D004415 5.9e-80 302.0 315 51.4
Lsat_1_v5_gn_3_44301 Lactuca sativa HOM05D003854 ORTHO05D004415 5.9e-80 302.0 318 50.0
SEGI_09637 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 2.2e-79 300.1 312 49.7
CDE04G0582 Ceratophyllum demersum HOM05D003854 ORTHO05D004415 6.5e-79 298.5 315 51.1
BcaB08g34654 Brassica carinata HOM05D003854 ORTHO05D004415 2.5e-78 296.6 314 51.0
BcaC04g23014 Brassica carinata HOM05D003854 ORTHO05D004415 3.6e-77 292.7 300 52.3
Zm00001eb428540 Zea mays HOM05D003854 ORTHO05D004415 8.8e-76 288.1 332 48.8
FvH4_2g10631 Fragaria vesca HOM05D003854 ORTHO05D004415 1.3e-74 284.3 270 55.9
Sc18g0005420 Simmondsia chinensis HOM05D003854 ORTHO05D004415 2.2e-74 283.5 311 50.5
BcaC01g03005 Brassica carinata HOM05D003854 ORTHO05D004415 1.1e-73 281.2 314 49.0
Os04g0576800 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 1.1e-73 281.2 274 51.8
RcHm_v2.0_Chr6g0268321 Rosa chinensis HOM05D003854 ORTHO05D004415 4.1e-73 279.3 272 53.3
CSS0003544 Camellia sinensis var. sinensis HOM05D003854 ORTHO05D004415 1.6e-72 277.3 183 72.7
Os07g0493400 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 1.6e-72 277.3 319 48.9
HPP92_014428 Vanilla planifolia HOM05D003854 ORTHO05D004415 2.5e-70 270.0 275 48.7
Peaxi162Scf00016g00041 Petunia axillaris HOM05D003854 ORTHO05D004415 3.2e-70 269.6 315 50.2
Gohir.D13G096525 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.6e-69 267.3 315 48.6
Sp3g29780 Schrenkiella parvula HOM05D003854 ORTHO05D004415 5.2e-68 262.3 232 59.5
arahy.Tifrunner.gnm1.ann1.DJ2H3Y Arachis hypogaea HOM05D003854 ORTHO05D004415 8.8e-68 261.5 333 44.7
Ah.01g018700 Amaranthus hybridus HOM05D003854 ORTHO05D004415 1.2e-67 261.2 287 48.8
Lsat_1_v5_gn_3_44541 Lactuca sativa HOM05D003854 ORTHO05D004415 4.4e-67 259.2 312 47.1
Gorai.001G243600 Gossypium raimondii HOM05D003854 ORTHO05D004415 1.3e-66 257.7 302 48.7
C03p57260 Brassica napus HOM05D003854 ORTHO05D004415 1.7e-66 257.3 314 46.2
BolC3t18002H Brassica oleracea HOM05D003854 ORTHO05D004415 1.7e-66 257.3 314 46.2
BolC3t18001H Brassica oleracea HOM05D003854 ORTHO05D004415 5.0e-63 245.7 406 39.2
A07p04500 Brassica napus HOM05D003854 ORTHO05D004415 4.2e-62 242.7 316 44.0
arahy.Tifrunner.gnm1.ann1.EIL6RR Arachis hypogaea HOM05D003854 ORTHO05D004415 2.8e-58 229.9 277 48.4
Glyma.12G036600 Glycine max HOM05D003854 ORTHO05D004415 1.6e-56 224.2 244 48.4
Atru.chr5.3157 Acer truncatum HOM05D003854 ORTHO05D004415 1.3e-55 221.1 149 67.8
SMO367G0753 Selaginella moellendorffii HOM05D003854 ORTHO05D004415 9.5e-54 214.9 321 40.5
HanXRQChr17g0544071 Helianthus annuus HOM05D003854 ORTHO05D004415 2.1e-53 213.8 310 42.3
Zm00001eb073390 Zea mays HOM05D003854 ORTHO05D004415 1.2e-51 208.0 281 45.2
AUR62010373 Chenopodium quinoa HOM05D003854 ORTHO05D004415 1.3e-47 194.5 146 61.6
Mapoly0130s0019 Marchantia polymorpha HOM05D003854 ORTHO05D004415 1.7e-47 194.1 327 38.2
Pp3c2_14820 Physcomitrium patens HOM05D003854 ORTHO05D004415 4.7e-45 186.0 361 35.7
unitig_32.g11228 Utricularia gibba HOM05D003854 ORTHO05D004415 1.2e-43 181.4 166 54.8
Atru.chr5.3158 Acer truncatum HOM05D003854 ORTHO05D004415 1.9e-41 174.1 162 54.3
Gohir.A13G086490 Gossypium hirsutum HOM05D003854 ORTHO05D004415 3.5e-40 169.9 233 44.2
arahy.Tifrunner.gnm1.ann1.VP2AIV Arachis hypogaea HOM05D003854 ORTHO05D004415 8.6e-39 165.2 200 44.0
FAN20G2911 Fragaria x ananassa HOM05D003854 ORTHO05D004415 9.5e-38 161.8 168 53.0
DCAR_029109 Daucus carota HOM05D003854 ORTHO05D004415 3.6e-37 159.8 159 52.8
CBR_g38102 Chara braunii HOM05D003854 ORTHO05D004415 2.6e-35 153.7 336 33.9
TAR628G1389 Trochodendron aralioides HOM05D003854 ORTHO05D004415 5.8e-35 152.5 129 55.8
MELO3C028750.2 Cucumis melo HOM05D003854 ORTHO05D004415 4.0e-28 129.8 152 50.0
BraA03t13719Z Brassica rapa HOM05D003854 ORTHO05D004415 3.4e-27 126.7 208 39.4
FAN15G1606 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.4e-25 121.3 215 35.8
HanXRQChr17g0544321 Helianthus annuus HOM05D003854 ORTHO05D004415 1.2e-21 108.2 104 51.0
SEGI_30689 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 2.1e-21 107.5 136 43.4
Sabra04G0109800 Salix brachista HOM05D003854 ORTHO05D004415 1.4e-20 104.8 71 67.6
Gohir.A13G086535 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.9e-17 94.4 60 73.3
Actinidia00577 Actinidia chinensis HOM05D003854 ORTHO05D004415 7.8e-16 89.0 65 64.6
Cre17.g720950 Chlamydomonas reinhardtii HOM05D003854 ORTHO05D004415 1.0e-15 88.6 363 28.9
MCO04G152 Micromonas commoda HOM05D003854 ORTHO05D004415 5.3e-12 76.3 317 24.6
PRCOL_00000897 Prasinoderma coloniale HOM05D003854 ORTHO05D004415 1.6e-08 64.7 195 29.2
Thecc.02G074000 Theobroma cacao HOM05D003854 ORTHO05D004415 1.6e-08 64.7 127 37.8
arahy.Tifrunner.gnm1.ann1.1WM9G2 Arachis hypogaea HOM05D003854 ORTHO05D004415 2.5e-06 57.4 40 60.0
RcHm_v2.0_Chr6g0268311 Rosa chinensis HOM05D003854 ORTHO05D004415 5.6e-06 56.2 38 68.4
Aqoxy2G00655 Aquilegia oxysepala HOM05D002667 ORTHO05D002909 7.3e-06 55.8 155 30.3


User provided reference genes

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