Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 2.5e-62 241.9 116 100.0
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 1.9e-30 136.0 66 92.4
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 4.2e-30 134.8 66 90.9
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.8e-28 127.1 70 80.0
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.8e-28 127.1 70 80.0
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 2.6e-27 125.6 64 85.9
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 3.3e-27 125.2 65 86.2
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 3.3e-27 125.2 65 86.2
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 4.4e-27 124.8 65 84.6
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 4.4e-27 124.8 65 84.6
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 4.4e-27 124.8 65 84.6
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 9.7e-27 123.6 65 84.6
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.2e-26 122.5 70 80.0
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 2.2e-26 122.5 66 80.3
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 2.2e-26 122.5 66 80.3
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 2.8e-26 122.1 65 84.6
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 3.7e-26 121.7 65 83.1
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 4.8e-26 121.3 65 84.6
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 4.8e-26 121.3 65 84.6
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 4.8e-26 121.3 65 84.6
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 6.3e-26 120.9 66 81.8
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 8.2e-26 120.6 65 81.5
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 8.2e-26 120.6 65 84.6
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 8.2e-26 120.6 65 80.0
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 1.1e-25 120.2 65 81.5
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 1.1e-25 120.2 66 81.8
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.1e-25 120.2 67 83.6
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 1.1e-25 120.2 66 77.3
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.4e-25 119.8 66 78.8
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 1.4e-25 119.8 65 81.5
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.4e-25 119.8 66 78.8
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 1.4e-25 119.8 65 81.5
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.4e-25 119.8 65 83.1
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 1.8e-25 119.4 65 81.5
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.8e-25 119.4 65 83.1
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 1.8e-25 119.4 65 83.1
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 2.4e-25 119.0 65 81.5
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 2.4e-25 119.0 67 79.1
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 2.4e-25 119.0 65 83.1
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 3.1e-25 118.6 79 72.2
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.1e-25 118.6 65 81.5
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.1e-25 118.6 65 81.5
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.1e-25 118.6 65 81.5
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 3.1e-25 118.6 65 81.5
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 4.1e-25 118.2 65 83.1
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 4.1e-25 118.2 65 81.5
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 4.1e-25 118.2 65 81.5
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 5.3e-25 117.9 65 78.5
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 5.3e-25 117.9 65 81.5
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 5.3e-25 117.9 65 81.5
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 5.3e-25 117.9 65 81.5
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 7.0e-25 117.5 68 75.0
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 7.0e-25 117.5 66 78.8
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 7.0e-25 117.5 66 78.8
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 7.0e-25 117.5 65 80.0
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 9.1e-25 117.1 70 74.3
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 9.1e-25 117.1 65 80.0
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 9.1e-25 117.1 65 80.0
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 9.1e-25 117.1 65 78.5
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.2e-24 116.7 65 80.0
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.2e-24 116.7 65 78.5
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 1.6e-24 116.3 65 76.9
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 1.6e-24 116.3 65 80.0
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 1.6e-24 116.3 65 80.0
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 1.6e-24 116.3 65 80.0
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.0e-24 115.9 66 75.8
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 2.0e-24 115.9 66 75.8
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.0e-24 115.9 66 75.8
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 2.0e-24 115.9 65 78.5
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 2.0e-24 115.9 71 73.2
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.0e-24 115.9 65 80.0
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 2.6e-24 115.5 65 78.5
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 2.6e-24 115.5 65 78.5
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 2.6e-24 115.5 65 78.5
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 2.6e-24 115.5 65 78.5
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 2.6e-24 115.5 65 78.5
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 2.6e-24 115.5 65 80.0
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.6e-24 115.5 65 78.5
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 2.6e-24 115.5 65 80.0
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 2.6e-24 115.5 67 77.6
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 2.6e-24 115.5 74 73.0
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 3.5e-24 115.2 65 76.9
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 3.5e-24 115.2 65 76.9
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 3.5e-24 115.2 65 76.9
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 3.5e-24 115.2 66 77.3
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 3.5e-24 115.2 65 80.0
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 4.5e-24 114.8 65 78.5
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 4.5e-24 114.8 65 78.5
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 4.5e-24 114.8 65 76.9
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 5.9e-24 114.4 65 76.9
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 5.9e-24 114.4 66 75.8
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 5.9e-24 114.4 66 75.8
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 5.9e-24 114.4 66 75.8
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 7.7e-24 114.0 65 76.9
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 7.7e-24 114.0 65 76.9
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 7.7e-24 114.0 65 76.9
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 7.7e-24 114.0 65 75.4
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 7.7e-24 114.0 65 78.5
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 7.7e-24 114.0 65 76.9
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 1.0e-23 113.6 65 76.9
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 1.0e-23 113.6 65 76.9
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.0e-23 113.6 65 76.9
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 1.0e-23 113.6 65 76.9
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 1.3e-23 113.2 65 81.5
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.3e-23 113.2 65 75.4
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.3e-23 113.2 66 77.3
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 1.7e-23 112.8 65 75.4
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 1.7e-23 112.8 65 76.9
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.7e-23 112.8 65 78.5
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.7e-23 112.8 65 78.5
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 2.9e-23 112.1 66 74.2
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 2.9e-23 112.1 65 76.9
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.8e-23 111.7 65 75.4
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 3.8e-23 111.7 65 75.4
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 5.0e-23 111.3 65 75.4
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 5.0e-23 111.3 65 75.4
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 6.5e-23 110.9 65 75.4
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 6.5e-23 110.9 65 75.4
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 8.5e-23 110.5 63 77.8
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 1.1e-22 110.2 65 76.9
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 2.1e-21 105.9 66 72.7
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 2.1e-21 105.9 66 72.7
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 2.1e-21 105.9 66 72.7
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 4.7e-21 104.8 65 72.3
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.3e-20 102.4 66 69.7
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 6.3e-18 94.4 65 58.5
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.1e-17 93.6 66 60.6
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 2.0e-16 89.4 48 79.2
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 6.5e-15 84.3 63 58.7
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 1.9e-14 82.8 69 46.4
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 6.8e-12 74.3 39 76.9
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 3.7e-10 68.6 54 59.3
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 7.7e-08 60.8 42 69.0


User provided reference genes

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