Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 5.0e-153 544.3 250 100.0
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 8.5e-44 181.4 116 66.4
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 7.9e-42 174.9 114 66.7
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 2.2e-39 166.8 114 63.2
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 4.8e-39 165.6 113 62.8
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 2.4e-38 163.3 113 62.8
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 6.9e-38 161.8 112 60.7
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 1.2e-37 161.0 114 64.0
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 1.2e-37 161.0 112 62.5
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 2.0e-37 160.2 112 63.4
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 3.4e-37 159.5 114 61.4
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 5.9e-37 158.7 112 60.7
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 5.9e-37 158.7 112 60.7
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 7.7e-37 158.3 114 60.5
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 7.7e-37 158.3 112 62.5
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 7.7e-37 158.3 112 60.7
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 1.0e-36 157.9 140 50.7
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 1.0e-36 157.9 112 58.9
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 1.3e-36 157.5 125 57.6
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 1.3e-36 157.5 112 61.6
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 1.3e-36 157.5 112 64.3
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.7e-36 157.1 112 60.7
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.7e-36 157.1 112 60.7
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 1.7e-36 157.1 115 64.3
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 2.2e-36 156.8 112 60.7
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 2.2e-36 156.8 112 60.7
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 2.9e-36 156.4 112 61.6
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 3.8e-36 156.0 114 60.5
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 3.8e-36 156.0 112 63.4
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 5.0e-36 155.6 114 59.6
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.1e-35 154.5 114 60.5
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 1.1e-35 154.5 112 58.0
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 1.9e-35 153.7 115 57.4
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 1.9e-35 153.7 115 57.4
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 2.5e-35 153.3 112 61.6
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 2.5e-35 153.3 115 59.1
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 2.5e-35 153.3 114 55.3
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 2.5e-35 153.3 112 58.0
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 2.5e-35 153.3 112 61.6
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 3.2e-35 152.9 112 62.5
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 3.2e-35 152.9 115 57.4
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 3.2e-35 152.9 112 57.1
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 4.2e-35 152.5 110 61.8
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 4.2e-35 152.5 112 62.5
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 7.2e-35 151.8 112 61.6
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 9.4e-35 151.4 112 56.2
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 9.4e-35 151.4 112 57.1
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.6e-34 150.6 112 56.2
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.6e-34 150.6 112 56.2
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.6e-34 150.6 112 56.2
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 1.6e-34 150.6 114 58.8
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 2.1e-34 150.2 122 55.7
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 2.7e-34 149.8 114 59.6
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 3.6e-34 149.4 119 58.8
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 3.6e-34 149.4 114 57.9
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 4.7e-34 149.1 112 60.7
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 6.1e-34 148.7 112 59.8
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 6.1e-34 148.7 114 57.9
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 7.9e-34 148.3 112 56.2
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 7.9e-34 148.3 114 57.9
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 7.9e-34 148.3 115 60.9
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 1.4e-33 147.5 114 57.0
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 2.3e-33 146.7 115 59.1
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 3.9e-33 146.0 122 54.1
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 5.2e-33 145.6 114 57.9
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 5.2e-33 145.6 112 58.9
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 8.8e-33 144.8 112 58.0
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 8.8e-33 144.8 112 58.0
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 8.8e-33 144.8 114 58.8
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 8.8e-33 144.8 114 57.9
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 8.8e-33 144.8 114 57.9
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 1.1e-32 144.4 112 57.1
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 1.5e-32 144.1 110 60.0
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 2.0e-32 143.7 113 57.5
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 2.0e-32 143.7 112 57.1
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 2.0e-32 143.7 115 58.3
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 2.6e-32 143.3 114 57.0
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 5.7e-32 142.1 112 57.1
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 5.7e-32 142.1 112 55.4
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 7.4e-32 141.7 114 56.1
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 7.4e-32 141.7 115 56.5
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 9.7e-32 141.4 114 57.0
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 2.2e-31 140.2 116 54.3
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 2.8e-31 139.8 114 55.3
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 2.8e-31 139.8 114 55.3
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 3.7e-31 139.4 114 55.3
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 2.6e-29 133.3 114 54.4
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 2.2e-28 130.2 95 58.9
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 7.2e-27 125.2 104 54.8
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 7.2e-27 125.2 104 54.8
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 1.5e-24 117.5 102 52.9
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 4.4e-24 115.9 97 54.6
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 8.5e-20 101.7 86 57.0
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 1.0e-17 94.7 88 56.8
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 2.3e-17 93.6 119 35.3
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 1.1e-14 84.7 118 32.2
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 2.4e-14 83.6 50 72.0
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 5.4e-14 82.4 118 33.1
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 9.1e-14 81.6 118 33.1
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.2e-13 81.3 118 33.1
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.0e-13 80.5 112 37.5
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 4.5e-13 79.3 117 30.8
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 5.9e-13 79.0 112 33.9
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 1.3e-12 77.8 97 34.0
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 1.7e-12 77.4 117 30.8
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 5.0e-12 75.9 119 32.8
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 5.0e-12 75.9 119 32.8
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 6.5e-12 75.5 124 31.5
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.6e-12 75.1 119 31.9
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 1.5e-11 74.3 123 32.5
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 2.5e-11 73.6 114 33.3
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.5e-11 72.4 136 30.1
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 2.1e-10 70.5 113 29.2
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.8e-10 70.1 122 30.3
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 1.0e-09 68.2 112 31.2
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 1.0e-09 68.2 113 29.2
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 1.8e-09 67.4 113 30.1
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.0e-09 66.2 131 31.3
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 5.2e-09 65.9 112 32.1
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 8.8e-09 65.1 96 37.5
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.2e-08 64.7 119 29.4
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 2.0e-08 63.9 118 33.1
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.0e-08 63.9 131 30.5
Lj4g0012468 Lotus japonicus HOM05D000256 ORTHO05D000119 2.0e-08 63.9 103 32.0
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 3.4e-08 63.2 110 31.8
Rhsim04G0228300 Rhododendron simsii HOM05D005430 ORTHO05D000119 3.4e-08 63.2 102 34.3
Sabra03G0128300 Salix brachista HOM05D008849 ORTHO05D010556 4.4e-08 62.8 110 34.5
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.7e-08 62.4 116 30.2
Hma1.2p1_0453F.1_g156140 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 7.5e-08 62.0 118 33.9
Rhsim09G0049800 Rhododendron simsii HOM05D000256 ORTHO05D000119 7.5e-08 62.0 110 32.7
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.3e-07 61.2 118 32.2
COL.COLO4_26204 Corchorus olitorius HOM05D008849 ORTHO05D010556 2.2e-07 60.5 117 29.1
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.2e-07 60.5 117 31.6
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 4.9e-07 59.3 116 28.4
Potri.001G053200 Populus trichocarpa HOM05D008849 ORTHO05D010556 4.9e-07 59.3 110 32.7
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 8.3e-07 58.5 118 29.7
SGA_v2.0_scaffold1G00733 Striga asiatica HOM05D000256 ORTHO05D000119 8.3e-07 58.5 101 35.6
Thecc.04G213000 Theobroma cacao HOM05D008849 ORTHO05D010556 1.1e-06 58.2 117 33.3
Potri.003G175100 Populus trichocarpa HOM05D008849 ORTHO05D010556 3.1e-06 56.6 110 30.9
Migut.H02436 Erythranthe guttata HOM05D000256 ORTHO05D000119 5.4e-06 55.8 105 30.5
CAN.G394.111 Capsicum annuum HOM05D000256 ORTHO05D000119 9.2e-06 55.1 116 29.3
Rhsim09G0046300 Rhododendron simsii HOM05D000256 ORTHO05D000119 9.2e-06 55.1 105 28.6
RhsimUnG0178100 Rhododendron simsii HOM05D000256 ORTHO05D000119 9.2e-06 55.1 105 28.6
RhsimUnG0182200 Rhododendron simsii HOM05D000256 ORTHO05D000119 9.2e-06 55.1 105 28.6
PGSC0003DMG400037544 Solanum tuberosum HOM05D000256 ORTHO05D000119 9.2e-06 55.1 104 30.8


User provided reference genes

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