Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 2.2e-131 472.2 234 100.0
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 8.9e-96 354.0 234 78.2
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 8.4e-94 347.4 242 74.4
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 7.1e-93 344.4 230 76.1
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 1.6e-92 343.2 233 73.4
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 1.6e-92 343.2 233 76.0
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 2.7e-92 342.4 236 73.7
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 4.6e-92 341.7 232 75.9
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 4.6e-92 341.7 232 75.9
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 7.8e-92 340.9 226 75.7
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 3.0e-91 339.0 231 74.5
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 7.3e-90 334.3 228 73.7
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 7.3e-90 334.3 231 73.2
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 2.1e-89 332.8 228 73.7
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 3.6e-89 332.0 229 72.9
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 6.2e-89 331.3 227 73.6
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 8.1e-89 330.9 231 72.3
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 1.1e-88 330.5 232 73.3
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 1.8e-88 329.7 230 73.0
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 1.8e-88 329.7 231 72.7
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 5.2e-88 328.2 229 72.1
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 6.9e-88 327.8 229 71.2
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 8.9e-88 327.4 227 73.6
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 1.5e-87 326.6 228 72.4
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 1.5e-87 326.6 229 72.9
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 2.6e-87 325.9 217 74.7
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 2.6e-87 325.9 224 72.3
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 2.6e-87 325.9 230 72.2
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 3.4e-87 325.5 228 72.8
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 4.4e-87 325.1 225 71.1
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 5.8e-87 324.7 230 70.4
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 7.6e-87 324.3 228 71.1
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 9.9e-87 323.9 229 70.3
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 9.9e-87 323.9 224 71.4
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 1.7e-86 323.2 230 71.3
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 1.7e-86 323.2 231 71.0
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 2.9e-86 322.4 229 70.3
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 2.9e-86 322.4 229 72.9
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 2.9e-86 322.4 233 71.2
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 3.8e-86 322.0 231 74.0
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 3.8e-86 322.0 227 70.5
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 3.8e-86 322.0 233 71.2
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 4.9e-86 321.6 230 72.6
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 4.9e-86 321.6 229 71.6
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 8.4e-86 320.9 217 74.2
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 8.4e-86 320.9 230 72.2
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 8.4e-86 320.9 232 71.6
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.9e-85 319.7 231 70.6
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 2.4e-85 319.3 222 71.2
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 2.4e-85 319.3 227 71.4
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 3.2e-85 318.9 231 70.1
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 4.2e-85 318.5 228 69.3
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 4.2e-85 318.5 230 70.4
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 5.4e-85 318.2 230 70.0
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.2e-84 317.0 233 70.8
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.6e-84 316.6 227 69.6
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.6e-84 316.6 230 72.2
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 7.8e-84 314.3 228 68.9
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 1.3e-83 313.5 228 69.3
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 2.3e-83 312.8 240 70.0
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 2.3e-83 312.8 219 70.3
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 3.9e-83 312.0 233 69.1
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 6.6e-83 311.2 232 69.0
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 1.5e-82 310.1 241 65.1
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 5.6e-82 308.1 226 68.6
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 5.6e-82 308.1 229 69.0
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 5.6e-82 308.1 229 69.0
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 1.3e-81 307.0 223 69.1
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 6.2e-81 304.7 232 69.8
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 9.0e-80 300.8 226 66.4
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 3.4e-79 298.9 225 67.1
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 5.8e-79 298.1 231 68.0
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 7.6e-79 297.7 227 69.2
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 9.9e-79 297.4 230 66.1
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 9.9e-79 297.4 226 65.9
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.2e-78 296.2 231 67.5
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 1.9e-77 293.1 201 72.6
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 5.1e-75 285.0 220 67.3
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 6.7e-75 284.6 229 64.2
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 1.1e-74 283.9 217 65.0
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 2.5e-74 282.7 267 57.7
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 3.3e-74 282.3 221 67.4
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 4.3e-74 282.0 228 63.6
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 1.6e-73 280.0 236 65.3
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 4.8e-73 278.5 244 59.0
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 4.8e-73 278.5 217 64.5
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 1.7e-70 270.0 233 64.4
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 3.8e-70 268.9 165 77.0
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 1.9e-69 266.5 165 77.0
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 4.2e-69 265.4 230 62.2
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 6.7e-67 258.1 290 52.1
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 4.8e-65 251.9 150 80.0
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 5.3e-64 248.4 230 60.4
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 2.1e-60 236.5 142 78.9
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 1.9e-58 229.9 214 55.6
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 1.6e-57 226.9 225 55.1
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 1.1e-56 224.2 229 53.7
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 1.1e-56 224.2 210 55.2
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 1.1e-56 224.2 145 71.7
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 1.8e-56 223.4 238 56.3
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 1.8e-56 223.4 252 52.4
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 3.1e-56 222.6 231 51.9
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 1.4e-53 213.8 146 71.9
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 3.0e-51 206.1 144 68.1
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 2.5e-50 203.0 207 50.2
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 5.7e-50 201.8 225 52.4
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 1.3e-49 200.7 111 82.0
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 1.4e-48 197.2 109 80.7
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 1.8e-48 196.8 109 80.7
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 5.3e-48 195.3 109 78.9
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 2.9e-46 189.5 145 64.8
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 4.4e-42 175.6 211 45.5
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 4.4e-42 175.6 209 51.7
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 4.2e-37 159.1 160 48.1
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 6.1e-36 155.2 92 76.1
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 1.5e-34 150.6 98 69.4
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 2.6e-34 149.8 107 77.6
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 8.2e-33 144.8 97 71.1
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 6.5e-30 135.2 108 68.5
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 1.9e-29 133.7 74 75.7
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 5.5e-29 132.1 108 67.6
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 7.2e-29 131.7 98 71.4
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 9.4e-29 131.3 103 70.9
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 1.6e-28 130.6 83 69.9
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.0e-27 127.9 108 65.7
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 9.1e-24 114.8 67 79.1
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 1.3e-17 94.4 61 72.1
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 2.4e-16 90.1 48 83.3
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 1.3e-14 84.3 56 67.9
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 8.6e-14 81.6 72 63.9
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 3.6e-12 76.3 37 94.6
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 6.1e-12 75.5 73 54.8
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 6.1e-12 75.5 60 65.0
MCO12G133 Micromonas commoda HOM05D005047 ORTHO05D049269 2.3e-11 73.6 208 28.4
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 6.8e-11 72.0 67 55.2
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 1.8e-08 63.9 183 32.2
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 9.2e-08 61.6 49 65.3
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 3.5e-07 59.7 46 67.4
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 1.7e-06 57.4 43 69.8
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 2.3e-06 57.0 108 38.9
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 2.9e-06 56.6 47 63.8
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.9e-06 56.6 49 61.2
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.9e-06 56.6 32 84.4
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 5.0e-06 55.8 143 32.9
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 8.6e-06 55.1 90 42.2


User provided reference genes

Program Settings