Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.0e-199 699.9 354 100.0
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.5e-99 367.1 407 47.7
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.0e-99 366.7 390 50.0
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.4e-97 360.5 396 47.7
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.5e-97 359.8 391 49.1
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.2e-97 359.4 405 48.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.2e-97 359.4 426 46.7
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 4.2e-97 359.0 396 48.0
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 1.6e-96 357.1 389 48.3
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.1e-96 356.7 382 49.0
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 3.6e-96 355.9 399 46.9
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 4.6e-96 355.5 397 47.1
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 4.6e-96 355.5 404 46.8
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 7.9e-96 354.8 337 51.9
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.9e-96 354.8 397 47.1
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.0e-95 354.4 399 46.6
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.4e-95 354.0 408 48.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.8e-95 353.6 397 46.9
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.8e-95 353.6 397 47.1
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.8e-95 353.6 372 49.2
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.0e-95 352.8 413 46.5
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 6.7e-95 351.7 376 49.7
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 6.7e-95 351.7 382 49.0
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 8.8e-95 351.3 383 48.3
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.1e-94 350.9 419 45.6
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.5e-94 350.5 397 46.9
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.5e-94 350.5 386 47.7
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.5e-94 349.7 386 47.9
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 3.3e-94 349.4 381 49.1
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 4.3e-94 349.0 398 47.2
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 7.4e-94 348.2 398 46.2
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 7.4e-94 348.2 381 47.5
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.3e-93 347.4 382 47.4
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.8e-93 346.3 396 46.2
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 4.8e-93 345.5 406 47.3
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 4.8e-93 345.5 391 46.5
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 4.8e-93 345.5 382 46.9
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 6.3e-93 345.1 393 46.1
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.1e-92 344.4 406 45.6
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.4e-92 344.0 401 45.6
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.8e-92 343.6 401 45.6
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 2.4e-92 343.2 382 47.4
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.1e-92 342.8 393 45.8
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 3.1e-92 342.8 406 45.6
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 5.3e-92 342.0 379 47.2
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 5.3e-92 342.0 406 45.6
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 9.1e-92 341.3 381 47.2
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.2e-91 340.9 382 46.6
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.2e-91 340.9 373 49.6
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 2.0e-91 340.1 382 46.9
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.5e-91 339.0 390 44.6
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 7.7e-91 338.2 382 46.3
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 7.7e-91 338.2 377 48.0
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 7.7e-91 338.2 382 46.6
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.0e-90 337.8 403 45.2
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.7e-90 337.0 382 46.6
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.7e-90 337.0 382 46.1
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 2.2e-90 336.7 368 48.4
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 2.9e-90 336.3 382 45.8
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 5.0e-90 335.5 382 46.1
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 5.0e-90 335.5 380 46.3
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 5.0e-90 335.5 384 45.6
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 8.5e-90 334.7 375 46.4
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 8.5e-90 334.7 404 43.8
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 7.2e-89 331.6 379 45.1
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 7.2e-89 331.6 371 46.9
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 9.4e-89 331.3 380 45.3
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.1e-88 330.1 371 46.6
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 6.1e-88 328.6 393 44.3
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.0e-87 327.8 372 46.2
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 3.9e-87 325.9 372 45.4
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.1e-86 324.3 373 45.0
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.5e-86 323.9 381 45.9
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.5e-86 323.9 381 45.9
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.5e-86 323.9 405 44.2
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 2.0e-86 323.6 382 45.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 2.6e-86 323.2 382 45.8
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.3e-86 322.8 404 44.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 7.4e-86 321.6 428 42.1
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.7e-85 320.5 384 46.6
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 6.3e-85 318.5 445 40.9
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.4e-84 317.4 354 48.0
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 3.1e-84 316.2 430 42.3
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 3.1e-84 316.2 354 46.3
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 7.0e-84 315.1 385 44.4
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 9.1e-84 314.7 388 43.3
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 3.4e-83 312.8 395 43.5
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 4.5e-83 312.4 373 43.7
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.1e-80 303.5 365 44.7
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 3.6e-80 302.8 389 45.0
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 3.6e-80 302.8 431 42.0
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.3e-78 296.2 413 41.4
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 7.4e-78 295.0 365 43.8
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 8.2e-77 291.6 377 41.4
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 5.3e-76 288.9 334 49.1
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.2e-75 287.7 386 42.0
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 1.9e-73 280.4 361 41.0
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.2e-72 277.7 338 45.6
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.2e-70 271.2 229 55.9
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.8e-69 266.5 371 38.8
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.7e-69 266.2 322 44.4
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 3.7e-69 266.2 376 36.4
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.1e-68 263.1 207 58.9
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 5.3e-68 262.3 327 42.5
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.2e-64 251.1 331 42.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 4.0e-63 246.1 323 41.8
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.8e-56 223.4 295 42.0
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 4.7e-56 222.6 326 38.7
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.8e-55 220.7 309 41.7
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.3e-55 220.3 389 33.9
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.0e-55 219.9 214 51.9
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.3e-50 204.5 382 33.2
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.3e-50 203.8 306 39.9
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.3e-49 199.9 314 36.6
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 8.3e-45 185.3 316 35.8
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 5.4e-44 182.6 281 41.6
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 7.3e-41 172.2 152 55.3
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.3e-37 161.4 139 53.2
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-32 144.1 142 45.8
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 5.2e-31 139.4 110 61.8
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.9e-28 131.0 102 62.7
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 4.6e-27 126.3 268 32.1
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.5e-25 121.3 106 56.6
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 4.3e-25 119.8 105 56.2
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 4.4e-22 109.8 110 52.7
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 3.5e-19 100.1 100 54.0
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 6.6e-18 95.9 88 53.4
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 4.0e-15 86.7 84 48.8
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 9.0e-15 85.5 97 49.5
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.6e-11 74.7 61 50.8
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.1e-11 74.3 75 46.7
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.7e-11 73.9 69 50.7
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 2.1e-08 64.3 49 59.2
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.5e-06 58.2 58 51.7
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 4.5e-06 56.6 43 60.5


User provided reference genes

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