Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 1.4e-68 262.7 123 100.0
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.6e-11 73.2 46 73.9
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 7.9e-11 70.9 46 67.4
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 7.9e-11 70.9 46 67.4
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.0e-10 70.5 45 71.1
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 1.4e-10 70.1 45 71.1
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 3.9e-10 68.6 46 67.4
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 3.9e-10 68.6 45 68.9
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 5.1e-10 68.2 46 65.2
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 5.1e-10 68.2 45 68.9
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 5.1e-10 68.2 45 68.9
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 6.7e-10 67.8 45 68.9
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 1.1e-09 67.0 39 79.5
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 1.5e-09 66.6 46 63.0
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.5e-09 66.6 46 65.2
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 2.0e-09 66.2 45 68.9
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 2.0e-09 66.2 46 65.2
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 2.0e-09 66.2 46 65.2
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 2.6e-09 65.9 46 65.2
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.6e-09 65.9 46 60.9
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 2.6e-09 65.9 45 66.7
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 2.6e-09 65.9 46 67.4
SGA_v2.0_scaffold135G34859 Striga asiatica HOM05D003182 ORTHO05D003829 2.6e-09 65.9 40 77.5
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 3.3e-09 65.5 46 63.0
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 3.3e-09 65.5 46 65.2
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 3.3e-09 65.5 46 60.9
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 3.3e-09 65.5 46 63.0
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.3e-09 65.5 46 65.2
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.3e-09 65.5 46 65.2
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 3.3e-09 65.5 46 65.2
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 3.3e-09 65.5 46 65.2
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 4.4e-09 65.1 45 64.4
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.4e-09 65.1 46 65.2
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 4.4e-09 65.1 46 63.0
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 5.7e-09 64.7 45 64.4
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 5.7e-09 64.7 45 64.4
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 5.7e-09 64.7 45 64.4
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 5.7e-09 64.7 46 65.2
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 7.4e-09 64.3 45 64.4
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 7.4e-09 64.3 45 64.4
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 7.4e-09 64.3 45 64.4
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 7.4e-09 64.3 45 64.4
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 7.4e-09 64.3 46 63.0
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 7.4e-09 64.3 46 63.0
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 9.7e-09 63.9 45 64.4
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 9.7e-09 63.9 45 64.4
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 1.3e-08 63.5 45 60.0
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 1.3e-08 63.5 45 60.0
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 1.3e-08 63.5 46 60.9
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.3e-08 63.5 45 62.2
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.3e-08 63.5 45 62.2
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 1.3e-08 63.5 45 62.2
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.7e-08 63.2 46 60.9
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.7e-08 63.2 46 63.0
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.7e-08 63.2 45 62.2
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.7e-08 63.2 45 62.2
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 3.7e-08 62.0 46 60.9
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 3.7e-08 62.0 45 62.2
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 3.7e-08 62.0 38 71.1
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 4.8e-08 61.6 41 68.3
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 4.8e-08 61.6 45 62.2
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 4.8e-08 61.6 45 62.2
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 4.8e-08 61.6 45 62.2
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 4.8e-08 61.6 38 68.4
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.8e-08 61.6 38 68.4
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.8e-08 61.6 38 68.4
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.8e-08 61.6 38 68.4
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 6.3e-08 61.2 46 60.9
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 6.3e-08 61.2 46 58.7
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 6.3e-08 61.2 46 56.5
vmacro18240 Vaccinium macrocarpon HOM05D003182 ORTHO05D003829 6.3e-08 61.2 40 67.5
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 8.2e-08 60.8 45 62.2
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 8.2e-08 60.8 45 62.2
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 8.2e-08 60.8 45 62.2
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 8.2e-08 60.8 46 58.7
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.2e-08 60.8 35 71.4
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 8.2e-08 60.8 42 61.9
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 8.2e-08 60.8 46 56.5
Nitab4.5_0005176g0070 Nicotiana tabacum HOM05D003182 ORTHO05D003829 1.1e-07 60.5 46 60.9
SGA_v2.0_scaffold205G41704 Striga asiatica HOM05D003182 ORTHO05D003829 1.1e-07 60.5 40 70.0
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.4e-07 60.1 44 61.4
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.4e-07 60.1 44 61.4
Actinidia35739 Actinidia chinensis HOM05D003182 ORTHO05D003829 2.4e-07 59.3 47 57.4
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 2.4e-07 59.3 46 58.7
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.4e-07 59.3 46 58.7
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 3.1e-07 58.9 46 58.7
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 3.1e-07 58.9 44 59.1
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 3.1e-07 58.9 46 63.0
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 3.1e-07 58.9 46 56.5
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 4.1e-07 58.5 46 56.5
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 4.1e-07 58.5 46 56.5
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 4.1e-07 58.5 46 56.5
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 5.3e-07 58.2 46 56.5
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 5.3e-07 58.2 46 54.3
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 7.0e-07 57.8 45 60.0
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 9.1e-07 57.4 44 54.5
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 9.1e-07 57.4 44 54.5
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 9.1e-07 57.4 44 54.5
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.2e-06 57.0 46 54.3
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 1.2e-06 57.0 35 71.4
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.5e-06 56.6 46 54.3
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.5e-06 56.6 46 58.7
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.5e-06 56.6 46 56.5
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 2.6e-06 55.8 46 56.5
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 2.6e-06 55.8 36 66.7
Dinv35057 Davidia involucrata HOM05D003182 ORTHO05D003829 3.4e-06 55.5 40 60.0
Peaxi162Scf00129g01034 Petunia axillaris HOM05D003182 ORTHO05D003829 3.4e-06 55.5 40 62.5
Haze_14666 Corylus avellana HOM05D003182 ORTHO05D003829 4.5e-06 55.1 40 62.5
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 4.5e-06 55.1 36 66.7
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 4.5e-06 55.1 46 58.7
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 5.9e-06 54.7 36 63.9
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 5.9e-06 54.7 36 63.9
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 7.7e-06 54.3 42 57.1
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 7.7e-06 54.3 45 53.3
QL02p076707 Quercus lobata HOM05D003182 ORTHO05D003829 7.7e-06 54.3 40 65.0
Rhsim08G0055300 Rhododendron simsii HOM05D003182 ORTHO05D003829 7.7e-06 54.3 40 60.0


User provided reference genes

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