Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 8.9e-142 506.9 254 100.0
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.3e-103 380.2 255 78.4
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 2.5e-99 365.9 255 74.1
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.6e-85 319.3 251 66.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.1e-83 313.9 256 67.6
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 5.5e-83 311.6 254 65.4
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 9.4e-83 310.8 245 67.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.0e-81 307.4 256 64.8
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 2.0e-80 303.1 256 63.3
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.7e-80 301.6 256 63.7
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 4.8e-79 298.5 256 63.3
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 6.3e-79 298.1 256 62.9
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.2e-77 293.9 272 60.7
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 3.5e-77 292.4 232 66.4
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.0e-76 290.8 252 64.7
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.1e-75 287.3 218 68.8
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.1e-75 287.3 251 63.3
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.9e-75 286.6 255 62.7
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 4.2e-75 285.4 254 63.8
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 5.5e-75 285.0 215 69.3
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.6e-74 283.5 252 61.9
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.7e-74 282.7 256 61.3
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.6e-74 282.3 264 61.7
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.7e-74 282.0 249 61.4
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.8e-73 280.0 213 70.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 2.3e-73 279.6 254 58.7
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 5.2e-73 278.5 231 64.5
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 6.8e-73 278.1 245 62.0
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.2e-72 277.3 207 71.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 2.6e-72 276.2 259 62.2
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 2.6e-72 276.2 252 61.9
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 3.4e-72 275.8 249 61.8
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 4.4e-72 275.4 249 61.8
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 5.7e-72 275.0 218 67.0
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 9.8e-72 274.2 274 58.0
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.7e-71 273.5 266 59.0
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 4.8e-71 271.9 255 60.4
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 6.3e-71 271.6 212 69.3
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.8e-70 270.0 256 61.7
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.4e-70 269.6 251 62.2
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 4.5e-69 265.4 208 65.9
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 5.9e-69 265.0 223 63.7
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.9e-69 265.0 230 62.6
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 5.9e-69 265.0 236 62.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.0e-68 264.2 206 68.0
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.3e-68 263.8 259 58.7
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.7e-68 263.5 260 58.5
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.7e-68 263.5 223 63.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 5.0e-68 261.9 209 65.1
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 6.5e-68 261.5 240 59.6
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.1e-67 260.8 261 59.4
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.5e-67 260.4 258 57.0
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.5e-67 260.4 223 62.8
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.5e-67 260.4 218 64.7
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.9e-67 260.0 215 65.6
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.5e-67 259.6 259 58.7
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 4.2e-67 258.8 210 66.7
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-66 257.3 252 56.0
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.7e-66 256.1 259 55.2
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.7e-66 256.1 234 59.4
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 4.7e-66 255.4 221 65.2
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 8.0e-66 254.6 183 72.1
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 8.0e-66 254.6 268 55.6
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 8.0e-66 254.6 259 55.2
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 8.0e-66 254.6 247 60.3
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.0e-65 254.2 267 55.8
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 8.8e-65 251.1 261 55.6
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.2e-64 250.8 280 52.1
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.5e-64 250.4 261 55.9
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.5e-64 250.4 222 59.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.0e-64 250.0 227 61.7
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.6e-64 249.6 214 63.6
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.6e-64 249.6 214 61.7
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.7e-64 248.4 261 55.2
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.7e-63 246.9 267 55.4
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.7e-63 246.9 230 60.4
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.2e-63 246.5 211 63.5
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.4e-62 243.0 269 52.8
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 7.0e-62 241.5 210 63.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 3.5e-61 239.2 215 63.7
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 7.7e-61 238.0 210 61.9
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 7.7e-61 238.0 257 58.4
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.8e-60 235.7 277 50.9
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.8e-60 235.7 225 57.3
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 3.8e-60 235.7 287 51.9
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 8.6e-60 234.6 249 55.8
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.1e-59 234.2 175 72.0
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.5e-59 233.8 272 52.6
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.9e-59 233.4 202 61.4
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.5e-59 233.0 263 52.5
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 4.3e-59 232.3 237 56.5
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 4.3e-59 232.3 222 58.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.2e-58 230.7 226 58.0
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.8e-58 229.6 266 51.9
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.0e-57 227.6 260 52.7
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.4e-57 227.3 261 53.3
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 3.0e-57 226.1 261 52.9
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 4.0e-57 225.7 261 52.1
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 4.0e-57 225.7 261 52.1
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 5.2e-57 225.3 308 46.8
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 8.9e-57 224.6 222 57.7
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.2e-56 224.2 226 55.3
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.3e-55 220.7 175 68.0
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.9e-55 219.5 176 68.8
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 3.7e-55 219.2 255 52.9
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 4.9e-55 218.8 232 55.6
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.1e-54 217.6 258 50.8
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.1e-54 217.6 258 50.8
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 4.1e-54 215.7 202 56.9
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 5.9e-53 211.8 265 47.9
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 2.3e-52 209.9 254 51.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.9e-52 209.1 202 55.0
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 5.0e-52 208.8 264 47.7
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 8.6e-52 208.0 264 47.7
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.5e-51 207.2 198 58.6
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.9e-51 206.8 164 61.0
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.3e-51 205.7 194 58.8
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 6.2e-50 201.8 266 46.6
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 8.0e-50 201.4 230 53.0
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-49 200.7 237 50.6
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.4e-49 200.7 177 64.4
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.8e-49 200.3 238 49.2
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 3.4e-48 196.1 217 52.5
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-47 193.7 164 57.9
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 8.3e-47 191.4 194 56.7
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 8.3e-47 191.4 165 58.8
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.7e-45 186.4 177 61.6
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.5e-45 186.0 202 54.5
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.5e-45 186.0 219 50.7
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 7.8e-45 184.9 180 55.0
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.9e-43 180.3 142 59.2
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.9e-43 180.3 216 47.2
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 7.3e-43 178.3 177 55.9
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.8e-42 176.4 262 43.1
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.1e-38 162.5 138 68.1
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 5.4e-38 162.2 191 51.3
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.3e-36 157.5 139 68.3
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 5.1e-36 155.6 127 59.8
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 9.5e-35 151.4 138 65.2
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.2e-34 151.0 143 55.2
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 7.6e-32 141.7 119 60.5
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 3.8e-31 139.4 159 52.2
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.2e-30 136.3 132 62.9
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.6e-29 134.0 163 44.8
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.7e-29 133.3 139 61.2
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.6e-27 125.6 114 55.3
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.4e-25 120.9 148 55.4
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.8e-25 120.6 134 56.7
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 3.1e-25 119.8 161 49.7
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.5e-24 117.5 103 52.4
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.0e-24 117.1 237 38.4
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.4e-24 116.3 151 52.3
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 7.6e-24 115.2 160 42.5
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 9.3e-22 108.2 105 52.4
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 3.5e-21 106.3 250 36.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 5.1e-20 102.4 93 50.5
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.9e-19 100.5 100 56.0
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 4.3e-19 99.4 137 49.6
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.6e-18 97.4 118 40.7
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.4e-17 93.6 101 54.5
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 4.5e-16 89.4 98 57.1
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.7e-15 87.4 96 56.2
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 6.7e-12 75.5 117 39.3
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.3e-10 71.2 55 56.4
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.6e-10 69.7 75 48.0
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 3.1e-09 66.6 92 40.2
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.9e-07 60.1 79 44.3
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 6.4e-07 58.9 78 47.4
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 7.1e-06 55.5 48 47.9
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 7.1e-06 55.5 93 38.7
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 7.1e-06 55.5 94 40.4
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 7.1e-06 55.5 47 44.7


User provided reference genes

Program Settings