Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 3.0e-179 632.9 706 100.0
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 8.5e-57 226.1 439 71.5
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 4.2e-48 197.2 530 61.7
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 4.7e-39 167.2 192 46.4
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.8e-35 155.2 193 44.6
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.6e-34 152.1 193 44.0
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 1.3e-28 132.5 187 38.5
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 6.1e-23 113.6 194 35.6
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 8.8e-22 109.8 183 35.0
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 1.2e-21 109.4 163 39.9
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 5.7e-21 107.1 179 35.2
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 7.5e-21 106.7 175 38.3
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 9.8e-21 106.3 213 32.9
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 9.8e-21 106.3 213 33.3
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 2.2e-20 105.1 213 32.9
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.4e-19 102.4 232 32.3
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.4e-19 102.4 149 38.9
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 2.4e-19 101.7 166 33.1
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 3.1e-19 101.3 146 35.6
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 3.1e-19 101.3 182 33.5
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 4.1e-19 100.9 159 35.8
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 5.4e-19 100.5 173 35.8
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 7.0e-19 100.1 145 35.2
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 9.2e-19 99.8 145 36.6
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 2.7e-18 98.2 159 35.2
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 3.5e-18 97.8 150 34.7
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 4.5e-18 97.4 150 34.7
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 4.5e-18 97.4 150 34.7
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 1.3e-17 95.9 163 35.6
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.7e-17 95.5 144 36.8
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 2.3e-17 95.1 202 35.1
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 2.9e-17 94.7 150 33.3
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 5.0e-17 94.0 164 31.1
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 6.6e-17 93.6 143 35.0
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 6.6e-17 93.6 133 40.6
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 1.5e-16 92.4 195 33.3
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 3.3e-16 91.3 163 34.4
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 3.3e-16 91.3 145 33.8
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 7.3e-16 90.1 152 38.2
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 7.3e-16 90.1 180 35.6
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 9.5e-16 89.7 153 34.6
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.2e-15 89.4 150 34.0
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 2.1e-15 88.6 163 33.7
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 3.6e-15 87.8 144 32.6
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.7e-15 87.4 183 31.1
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 1.0e-14 86.3 124 35.5
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 1.4e-14 85.9 122 33.6
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 2.3e-14 85.1 208 30.3
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 4.0e-14 84.3 94 46.8
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 6.8e-14 83.6 110 40.0
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 6.8e-14 83.6 200 32.0
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 6.8e-14 83.6 149 31.5
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 1.2e-13 82.8 145 32.4
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 1.5e-13 82.4 182 29.1
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 1.5e-13 82.4 182 29.1
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.5e-13 82.4 147 33.3
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 3.4e-13 81.3 134 36.6
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.4e-13 80.9 185 29.2
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 5.7e-13 80.5 131 35.1
SalBow6G6678 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.3e-12 79.3 52 69.2
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 1.7e-12 79.0 147 31.3
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.9e-12 78.2 192 28.6
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.9e-12 78.2 192 28.6
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 2.9e-12 78.2 125 32.8
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 2.9e-12 78.2 125 33.6
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 1.8e-11 75.5 144 30.6
DCAR_024407 Daucus carota HOM05D006694 ORTHO05D008240 1.8e-11 75.5 100 44.0
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.1e-11 74.3 196 28.1
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.1e-11 74.3 196 28.1
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 5.4e-11 73.9 135 33.3
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 7.0e-11 73.6 185 30.3
ECA238G0309 Erigeron canadensis HOM05D006295 ORTHO05D008061 1.6e-10 72.4 82 42.7
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 2.0e-10 72.0 139 33.1
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 2.0e-10 72.0 56 58.9
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.7e-10 71.6 102 35.3
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.7e-10 71.6 102 35.3
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 2.7e-10 71.6 106 34.9
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 2.7e-10 71.6 118 33.9
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.5e-10 71.2 102 34.3
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 4.6e-10 70.9 58 58.6
BolC1t05560H Brassica oleracea HOM05D008810 ORTHO05D010971 5.9e-10 70.5 160 35.6
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 7.8e-10 70.1 129 31.8
Aa31LG10G10300 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.0e-09 69.7 132 31.8
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.0e-09 69.7 128 31.2
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 2.3e-09 68.6 146 32.2
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 2.3e-09 68.6 149 32.9
BraA01t04388Z Brassica rapa HOM05D008810 ORTHO05D010971 3.9e-09 67.8 174 32.8
AT3G07290 Arabidopsis thaliana HOM05D008810 ORTHO05D010971 6.6e-09 67.0 164 31.7
arahy.Tifrunner.gnm1.ann1.5GFX18 Arachis hypogaea HOM05D000162 ORTHO05D000090 6.6e-09 67.0 133 27.8
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 6.6e-09 67.0 92 40.2
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 6.6e-09 67.0 188 30.3
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.6e-09 66.6 128 31.2
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.6e-09 66.6 128 31.2
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 8.6e-09 66.6 58 55.2
BNapus_Darmor_BZH_scaffold_109p00140 Brassica napus HOM05D008810 ORTHO05D010971 1.5e-08 65.9 159 34.0
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 1.5e-08 65.9 81 34.6
Sp3g06240 Schrenkiella parvula HOM05D008810 ORTHO05D010971 2.5e-08 65.1 167 31.7
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 3.3e-08 64.7 56 55.4
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 7.3e-08 63.5 136 32.4
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 1.2e-07 62.8 48 60.4
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 1.6e-07 62.4 87 35.6
BcaB04g21297 Brassica carinata HOM05D008810 ORTHO05D010971 2.1e-07 62.0 138 33.3
CARHR081940 Cardamine hirsuta HOM05D008810 ORTHO05D010971 2.1e-07 62.0 135 32.6
THA.LOC104808474 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.1e-07 62.0 132 29.5
EL10Ac5g10449 Beta vulgaris HOM05D000162 ORTHO05D000090 2.8e-07 61.6 116 26.7
vmacro15413 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 2.8e-07 61.6 143 27.3
vmacro13799 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 4.7e-07 60.8 153 28.1
AL3G18590 Arabidopsis lyrata HOM05D008810 ORTHO05D010971 6.2e-07 60.5 167 30.5
Aa31LG5G17860 Aethionema arabicum HOM05D008810 ORTHO05D010971 8.0e-07 60.1 146 30.1
ATR0737G136 Amborella trichopoda HOM05D006694 ORTHO05D008240 8.0e-07 60.1 107 28.0
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 1.0e-06 59.7 55 49.1
Dinv29903 Davidia involucrata HOM05D013428 ORTHO05D015803 1.4e-06 59.3 102 31.4
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 1.4e-06 59.3 55 50.9
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 1.4e-06 59.3 95 30.5
Thecc.01G216300 Theobroma cacao HOM05D008810 ORTHO05D010971 1.8e-06 58.9 154 29.2
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 2.3e-06 58.5 118 30.5
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.3e-06 58.5 103 28.2
SalBow3G0344 Salvia bowleyana HOM05D000162 ORTHO05D000090 2.3e-06 58.5 152 27.0
ATR0697G204 Amborella trichopoda HOM05D006694 ORTHO05D008240 4.0e-06 57.8 119 30.3
AT4G28010 Arabidopsis thaliana HOM05D006694 ORTHO05D008240 4.0e-06 57.8 118 31.4
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 4.0e-06 57.8 94 30.9
Duzib138G0800 Durio zibethinus HOM05D008810 ORTHO05D010971 4.0e-06 57.8 151 29.8
SalBow3G0952 Salvia bowleyana HOM05D000162 ORTHO05D000090 5.2e-06 57.4 137 27.7
Dinv38744 Davidia involucrata HOM05D007937 ORTHO05D010000 6.8e-06 57.0 96 32.3
Medtr3g094280 Medicago truncatula HOM05D006503 ORTHO05D008116 6.8e-06 57.0 94 33.0
RcHm_v2.0_Chr4g0414121 Rosa chinensis HOM05D000162 ORTHO05D000090 6.8e-06 57.0 107 30.8
SalBow3G3365 Salvia bowleyana HOM05D000162 ORTHO05D000090 6.8e-06 57.0 152 25.0
Zm00001eb114520 Zea mays HOM05D009701 ORTHO05D012112 6.8e-06 57.0 118 29.7
Lsat_1_v5_gn_4_109161 Lactuca sativa HOM05D007937 ORTHO05D010000 8.9e-06 56.6 94 33.0
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 8.9e-06 56.6 127 29.1
MBI11_g34857_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 8.9e-06 56.6 125 29.6
MD06G1203500 Malus domestica HOM05D005362 ORTHO05D006895 8.9e-06 56.6 137 27.7
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 8.9e-06 56.6 134 29.9


User provided reference genes

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