Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 1.1e-139 500.0 258 100.0
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 1.1e-35 154.5 300 40.7
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 7.4e-35 151.8 277 43.0
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 5.5e-22 109.0 256 36.7
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 2.4e-17 93.6 324 31.2
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 7.0e-17 92.0 306 31.7
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 2.7e-16 90.1 334 31.7
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 4.5e-16 89.4 296 32.4
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 4.5e-16 89.4 321 31.8
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 4.5e-16 89.4 329 31.6
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 5.9e-16 89.0 228 34.2
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 7.7e-16 88.6 266 33.1
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.3e-15 87.8 310 33.5
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 3.8e-15 86.3 325 32.9
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 3.8e-15 86.3 247 32.8
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 8.5e-15 85.1 133 42.9
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.1e-14 84.7 133 42.1
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 1.9e-14 84.0 169 39.6
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 2.5e-14 83.6 133 42.1
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 3.2e-14 83.2 226 32.3
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 4.2e-14 82.8 294 31.6
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 7.2e-14 82.0 329 31.0
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 1.2e-13 81.3 140 42.1
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 2.7e-13 80.1 146 39.7
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 2.7e-13 80.1 147 40.1
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 3.6e-13 79.7 274 32.5
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 3.6e-13 79.7 163 39.9
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 6.1e-13 79.0 141 40.4
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 8.0e-13 78.6 162 40.1
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 2.3e-12 77.0 165 37.0
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 3.0e-12 76.6 146 40.4
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 8.8e-12 75.1 147 38.1
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 8.8e-12 75.1 133 39.1
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 1.2e-11 74.7 142 37.3
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 1.2e-11 74.7 139 41.7
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 2.0e-11 73.9 116 44.8
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 2.0e-11 73.9 250 30.8
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 3.4e-11 73.2 278 30.6
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 4.4e-11 72.8 249 32.9
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 1.3e-10 71.2 250 30.8
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 1.3e-10 71.2 148 39.2
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 1.7e-10 70.9 294 30.6
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 1.7e-10 70.9 136 38.2
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 1.7e-10 70.9 154 39.6
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 3.7e-10 69.7 228 32.0
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 3.7e-10 69.7 221 30.8
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 1.1e-09 68.2 166 35.5
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 1.1e-09 68.2 121 39.7
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 1.1e-09 68.2 163 35.0
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 1.1e-09 68.2 174 34.5
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 1.1e-09 68.2 249 30.1
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 1.4e-09 67.8 132 38.6
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 1.4e-09 67.8 124 41.9
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 1.8e-09 67.4 263 30.0
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 2.4e-09 67.0 124 40.3
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 3.1e-09 66.6 93 46.2
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 3.1e-09 66.6 129 38.0
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 4.1e-09 66.2 250 31.2
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 4.1e-09 66.2 121 41.3
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 4.1e-09 66.2 141 34.8
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 4.1e-09 66.2 241 31.1
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 5.4e-09 65.9 252 30.6
PGSC0003DMG400025897 Solanum tuberosum HOM05D001841 ORTHO05D001767 5.4e-09 65.9 116 38.8
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 7.0e-09 65.5 119 38.7
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 9.1e-09 65.1 191 34.0
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 9.1e-09 65.1 119 41.2
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.6e-08 64.3 240 30.0
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 2.0e-08 63.9 135 37.8
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 2.7e-08 63.5 109 38.5
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.7e-08 63.5 207 30.4
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 3.5e-08 63.2 146 34.9
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 3.5e-08 63.2 164 36.6
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 4.5e-08 62.8 119 40.3
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 7.7e-08 62.0 124 33.9
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 1.0e-07 61.6 250 30.0
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 1.3e-07 61.2 84 50.0
Solyc01g108440.2 Solanum lycopersicum HOM05D001841 ORTHO05D001767 1.3e-07 61.2 130 33.8
Sopen01g050670 Solanum pennellii HOM05D001841 ORTHO05D001767 1.7e-07 60.8 130 33.8
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 2.9e-07 60.1 145 33.1
PGSC0003DMG400018346 Solanum tuberosum HOM05D001841 ORTHO05D001767 2.9e-07 60.1 120 37.5
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 5.0e-07 59.3 102 41.2
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 5.0e-07 59.3 213 27.7
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 5.0e-07 59.3 249 29.3
Sc08g0000020 Simmondsia chinensis HOM05D001841 ORTHO05D001767 6.5e-07 58.9 104 36.5
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 1.1e-06 58.2 75 48.0
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 1.5e-06 57.8 128 35.2
Lsat_1_v5_gn_5_113300 Lactuca sativa HOM05D001841 ORTHO05D001767 4.2e-06 56.2 130 34.6
Cpa.g.sc376.7 Carica papaya HOM05D001841 ORTHO05D001767 5.5e-06 55.8 155 31.6
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 5.5e-06 55.8 109 34.9
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 5.5e-06 55.8 100 41.0
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 7.2e-06 55.5 137 32.1
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 7.2e-06 55.5 133 30.1
PGSC0003DMG400045678 Solanum tuberosum HOM05D001841 ORTHO05D001767 7.2e-06 55.5 125 35.2
HanXRQChr11g0324211 Helianthus annuus HOM05D001841 ORTHO05D001767 9.4e-06 55.1 143 32.9


User provided reference genes

Program Settings