Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 1.1e-75 286.6 145 100.0
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 3.0e-33 145.6 99 76.8
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 1.8e-30 136.3 99 65.7
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 1.1e-27 127.1 99 68.7
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 1.4e-27 126.7 104 61.5
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 6.0e-26 121.3 99 57.6
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 8.7e-25 117.5 99 58.6
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 1.5e-24 116.7 106 52.8
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 3.3e-24 115.5 99 57.6
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 1.6e-23 113.2 98 56.1
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 2.1e-23 112.8 100 57.0
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 2.1e-23 112.8 100 57.0
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 2.8e-23 112.5 104 52.9
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 2.8e-23 112.5 99 56.6
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 3.7e-23 112.1 98 54.1
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 6.2e-23 111.3 103 52.4
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 8.2e-23 110.9 98 55.1
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 1.1e-22 110.5 99 53.5
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 1.1e-22 110.5 100 55.0
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 1.1e-22 110.5 100 56.0
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 1.8e-22 109.8 100 54.0
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.8e-22 109.8 100 54.0
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 5.3e-22 108.2 100 52.0
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 5.3e-22 108.2 99 54.5
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 9.0e-22 107.5 99 53.5
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.2e-21 107.1 100 52.0
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 1.2e-21 107.1 100 56.0
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 1.2e-21 107.1 100 56.0
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 1.2e-21 107.1 98 53.1
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 2.0e-21 106.3 98 54.1
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 2.0e-21 106.3 102 52.9
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 2.6e-21 105.9 99 53.5
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 3.4e-21 105.5 108 50.9
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 4.5e-21 105.1 106 52.8
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 4.5e-21 105.1 99 54.5
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 5.8e-21 104.8 103 52.4
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 7.6e-21 104.4 105 51.4
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 7.6e-21 104.4 99 54.5
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 7.6e-21 104.4 98 54.1
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 2.9e-20 102.4 101 52.5
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 2.9e-20 102.4 102 50.0
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 3.8e-20 102.1 98 51.0
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 4.9e-20 101.7 102 52.9
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 4.9e-20 101.7 100 51.0
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 4.9e-20 101.7 99 51.5
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 4.9e-20 101.7 102 51.0
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 6.5e-20 101.3 100 52.0
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 8.4e-20 100.9 98 55.1
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 8.4e-20 100.9 98 55.1
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 1.1e-19 100.5 102 52.9
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 1.4e-19 100.1 102 51.0
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 3.2e-19 99.0 101 50.5
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 4.2e-19 98.6 120 43.3
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 5.5e-19 98.2 99 51.5
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 9.3e-19 97.4 99 53.5
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 2.7e-18 95.9 108 45.4
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 2.7e-18 95.9 99 55.6
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 3.5e-18 95.5 101 55.4
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 6.0e-18 94.7 100 53.0
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 1.0e-17 94.0 100 53.0
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 1.0e-17 94.0 101 51.5
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 1.0e-17 94.0 102 52.9
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 1.0e-17 94.0 102 52.9
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 1.3e-17 93.6 102 50.0
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 1.8e-17 93.2 100 51.0
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 1.8e-17 93.2 99 48.5
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 2.3e-17 92.8 99 50.5
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 3.0e-17 92.4 101 53.5
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 3.0e-17 92.4 99 47.5
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 3.9e-17 92.0 99 49.5
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 3.9e-17 92.0 115 42.6
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 6.7e-17 91.3 100 50.0
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 1.1e-16 90.5 103 49.5
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 2.5e-16 89.4 98 46.9
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 3.3e-16 89.0 106 50.0
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 5.7e-16 88.2 99 52.5
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 9.7e-16 87.4 106 52.8
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 9.7e-16 87.4 106 52.8
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 1.3e-15 87.0 98 44.9
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 1.6e-15 86.7 102 48.0
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 1.8e-14 83.2 115 44.3
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 1.8e-14 83.2 77 54.5
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 2.4e-14 82.8 106 45.3
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 3.1e-14 82.4 100 46.0
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 5.3e-14 81.6 102 46.1
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 2.0e-13 79.7 77 51.9
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 4.5e-13 78.6 99 44.4
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 5.9e-13 78.2 99 45.5
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 1.7e-12 76.6 116 39.7
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 2.9e-12 75.9 62 56.5
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 3.8e-12 75.5 99 42.4
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 8.5e-12 74.3 111 45.0
Peaxi162Scf00032g02018 Petunia axillaris HOM05D021104 ORTHO05D008264 1.9e-11 73.2 79 49.4
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 2.5e-11 72.8 58 58.6
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 2.5e-11 72.8 79 50.6
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 3.2e-11 72.4 78 51.3
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 3.2e-11 72.4 99 47.5
Hund21962 Selenicereus undatus HOM05D007094 ORTHO05D008264 1.2e-10 70.5 100 43.0
SalBow6G5897 Salvia bowleyana HOM05D007094 ORTHO05D008264 2.1e-10 69.7 54 61.1
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 7.9e-10 67.8 102 40.2
DCAR_029979 Daucus carota HOM05D007094 ORTHO05D008264 1.4e-09 67.0 57 57.9
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 6.7e-09 64.7 74 50.0
Solyc01g008680.4 Solanum lycopersicum HOM05D021104 ORTHO05D008264 1.1e-08 63.9 80 45.0
Sopen01g004200 Solanum pennellii HOM05D021104 ORTHO05D008264 1.1e-08 63.9 80 45.0
PGSC0003DMG400004429 Solanum tuberosum HOM05D021104 ORTHO05D008264 1.1e-08 63.9 79 43.0
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 2.5e-08 62.8 82 47.6
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 3.3e-08 62.4 99 41.4
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 4.3e-08 62.0 74 50.0
C09p64630 Brassica napus HOM05D007094 ORTHO05D008264 1.4e-06 57.0 85 43.5
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 3.1e-06 55.8 64 48.4


User provided reference genes

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