Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 3504.5 1829 100.0
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2885.5 1852 80.4
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2793.8 1852 77.5
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2773.4 1849 78.0
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2453.7 1917 67.8
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2445.6 1853 68.9
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2399.0 1853 66.4
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2379.4 1874 66.2
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2363.2 1854 66.0
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2363.2 1844 66.4
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2333.9 1833 66.6
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2326.6 1854 64.3
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2323.5 1844 64.9
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2322.7 1849 64.9
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2322.0 1836 64.7
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2307.3 1853 63.6
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2306.2 1854 65.4
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2301.9 1837 64.4
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2290.8 1849 64.3
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2288.1 1848 63.7
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2283.8 1848 64.0
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2277.7 1887 62.9
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2276.5 1836 63.4
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2267.7 1854 63.9
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2265.7 1839 63.3
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2265.3 1828 63.9
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2260.3 1851 62.5
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2256.5 1843 63.3
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2246.1 1856 63.1
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2244.2 1838 62.8
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2241.5 1865 63.6
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2231.1 1849 61.9
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2222.2 1856 62.6
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2217.6 1857 62.5
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2214.1 1848 62.6
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2213.0 1840 62.3
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2212.2 1849 62.5
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2206.8 1837 62.0
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2203.3 1840 62.2
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2202.6 1835 62.8
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2189.1 1850 60.6
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2187.9 1831 62.0
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2187.1 1845 62.2
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2183.3 1848 62.0
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2179.8 1831 61.9
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2179.4 1852 61.4
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2173.7 1851 60.7
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2172.5 1850 62.2
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2161.7 1839 60.9
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2159.8 1837 61.8
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2157.1 1842 60.7
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2155.9 1859 60.7
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2153.6 1851 60.9
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2148.2 1850 61.4
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2144.0 1854 60.4
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2143.6 1837 61.2
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2140.9 1855 60.6
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2138.2 1851 59.7
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2135.9 1851 59.5
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2132.8 1835 59.6
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2131.3 2008 56.4
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2129.8 1849 59.4
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2127.4 1840 59.6
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2124.0 1851 59.2
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2124.0 1849 60.1
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2123.2 1865 59.1
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2122.1 2391 51.0
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2117.4 1857 58.8
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2112.0 1851 58.6
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2104.3 1851 58.7
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2103.9 1831 60.2
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2088.5 1832 60.6
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2074.3 1856 58.1
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2073.9 1865 57.9
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2001.5 1827 57.6
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1942.9 1377 71.0
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1932.5 1853 55.4
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1921.7 1346 72.4
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1870.1 1510 63.9
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1861.3 1530 62.8
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1822.0 1863 55.6
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1812.0 1426 65.1
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1779.6 1428 65.4
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1634.4 1333 63.7
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1580.5 1373 62.4
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1578.1 1232 66.5
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1560.0 1887 45.3
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1550.8 1385 60.4
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1504.6 1899 44.5
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1490.7 1899 44.5
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1461.4 1124 68.6
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1443.3 1660 47.3
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1378.2 1177 61.4
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1328.5 1349 53.9
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1260.7 1113 57.1
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1147.9 1073 56.6
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.1e-302 1044.3 937 57.7
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 4.3e-286 989.2 1551 37.1
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.6e-283 979.9 886 57.6
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 3.7e-245 853.2 1755 33.0
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 7.7e-235 818.9 1786 32.4
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 3.0e-223 780.4 783 52.7
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 7.7e-203 712.6 602 61.3
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 1.2e-200 705.3 665 56.7
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 7.7e-195 686.0 510 68.6
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.2e-168 599.0 682 48.5
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 2.7e-163 581.3 460 63.5
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 2.5e-161 574.7 2040 26.3
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.2e-158 565.8 448 65.2
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 4.4e-158 563.9 451 64.3
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 5.3e-151 540.4 500 55.4
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.2e-147 529.3 343 77.3
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 9.0e-135 486.5 461 57.5
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 1.2e-134 486.1 315 75.2
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 9.7e-113 413.3 824 33.9
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 2.6e-105 388.7 1637 24.2
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 2.2e-101 375.6 359 55.2
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 2.2e-101 375.6 294 64.6
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.8e-98 365.9 296 62.5
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 4.0e-98 364.8 294 62.9
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.3e-77 296.6 161 87.6
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.2e-65 256.9 201 65.2
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.9e-60 239.6 340 45.3
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.9e-56 224.9 288 46.2
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.3e-53 216.1 207 51.7
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 1.5e-49 203.4 207 51.7
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 5.4e-47 194.9 349 35.5
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.1e-45 188.3 145 65.5
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 3.3e-44 185.7 164 56.1
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 6.9e-42 177.9 130 69.2
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 2.6e-41 176.0 347 37.2
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 1.9e-39 169.9 285 37.5
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 2.3e-37 162.9 144 58.3
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 1.8e-34 153.3 184 47.3
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 9.0e-34 151.0 184 46.7
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 4.5e-33 148.7 168 48.2
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 3.0e-29 136.0 167 46.1
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.8e-26 126.7 239 34.3
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 2.6e-25 122.9 114 52.6
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 7.6e-25 121.3 88 65.9
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 6.4e-24 118.2 179 41.3
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 1.9e-23 116.7 78 73.1
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.2e-23 115.9 168 42.9
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 1.2e-22 114.0 73 74.0
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 1.8e-21 110.2 92 63.0
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 5.1e-21 108.6 227 36.1
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.8e-18 100.1 84 58.3
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 3.1e-18 99.4 152 39.5
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.5e-17 97.1 157 38.9
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 5.5e-15 88.6 80 60.0
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 5.1e-13 82.0 55 67.3
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 4.3e-12 79.0 216 25.9
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 7.4e-12 78.2 73 53.4
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.3e-11 77.4 113 41.6
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 3.1e-10 72.8 60 56.7
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 3.2e-07 62.8 71 47.9
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.6e-06 60.5 43 67.4


User provided reference genes

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