Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 9.1e-263 909.8 502 100.0
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 4.4e-201 704.9 462 85.3
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.1e-195 686.0 459 82.4
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.5e-188 663.3 476 79.4
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 3.1e-186 655.6 483 77.4
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 5.8e-185 651.4 461 78.7
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 6.4e-184 647.9 492 76.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.4e-184 647.5 461 77.9
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.1e-183 647.1 461 77.9
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.1e-183 647.1 462 78.8
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 4.8e-179 631.7 459 76.9
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.0e-178 628.6 462 77.3
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.5e-177 626.7 459 76.3
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 2.0e-177 626.3 462 76.8
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 3.4e-177 625.5 461 76.8
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 4.5e-177 625.2 459 75.6
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 7.6e-177 624.4 462 76.6
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.2e-176 622.9 462 75.5
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 2.9e-176 622.5 462 76.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 2.9e-176 622.5 462 74.9
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 6.4e-176 621.3 459 75.8
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.1e-175 620.5 462 74.2
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.4e-175 619.4 461 74.6
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 3.2e-175 619.0 462 75.8
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 9.3e-175 617.5 459 75.4
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 1.8e-173 613.2 462 74.9
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.5e-172 610.1 462 72.7
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.5e-172 609.4 461 75.5
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 7.4e-172 607.8 462 74.9
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.8e-171 605.9 465 73.3
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 4.8e-171 605.1 462 72.9
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.4e-170 602.8 466 73.2
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 3.1e-170 602.4 461 73.5
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 3.1e-170 602.4 462 73.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 6.9e-170 601.3 460 72.6
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.2e-169 600.5 463 73.2
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 2.6e-169 599.4 458 73.1
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 9.9e-169 597.4 461 73.3
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.3e-168 597.0 463 72.4
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.3e-168 597.0 462 72.3
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 2.9e-168 595.9 460 71.7
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 8.4e-168 594.3 459 71.2
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-167 594.0 462 71.2
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 2.4e-167 592.8 462 72.9
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-166 590.1 462 71.0
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-166 590.1 462 70.6
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.6e-166 590.1 459 71.2
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.0e-165 587.4 464 67.0
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.0e-165 587.4 462 71.6
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.8e-165 586.6 460 72.2
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.8e-165 586.6 462 70.6
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 3.9e-165 585.5 460 72.0
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 5.1e-165 585.1 460 72.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.5e-164 583.6 461 70.3
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 4.3e-164 582.0 462 71.0
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 7.4e-164 581.3 462 71.0
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 1.6e-163 580.1 460 72.0
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.1e-162 577.4 460 66.3
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.1e-162 577.4 460 66.3
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 9.0e-162 574.3 459 70.2
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.2e-161 573.9 505 61.6
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 3.4e-161 572.4 441 73.7
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 3.4e-161 572.4 460 71.1
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 5.8e-161 571.6 464 70.3
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.0e-160 570.9 465 70.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.7e-160 570.1 462 70.3
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 3.8e-160 568.9 462 70.1
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.1e-159 567.4 464 71.1
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.9e-159 566.6 464 70.9
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.5e-159 566.2 462 70.8
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 3.2e-159 565.8 459 70.2
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 4.2e-159 565.5 459 70.4
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.2e-158 563.9 460 70.2
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.8e-157 560.1 462 69.9
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 3.9e-157 558.9 462 69.5
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 5.1e-157 558.5 455 69.5
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.5e-156 557.0 459 66.7
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 5.7e-156 555.1 459 68.6
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 7.4e-156 554.7 464 68.8
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.1e-154 548.9 551 60.8
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.6e-153 546.2 462 69.5
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 2.2e-152 543.1 456 67.3
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.8e-152 542.3 462 69.0
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 5.0e-152 542.0 461 66.2
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 5.5e-151 538.5 456 66.9
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 5.5e-151 538.5 456 66.9
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 9.4e-151 537.7 456 66.7
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 3.6e-150 535.8 466 65.5
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 4.6e-150 535.4 465 62.4
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 4.6e-150 535.4 461 68.3
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.4e-149 533.9 462 66.9
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.7e-149 531.6 462 67.7
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.5e-148 530.4 462 62.6
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 3.3e-148 529.3 387 68.5
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.7e-147 525.8 462 66.2
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 8.2e-147 524.6 462 65.8
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 8.2e-147 524.6 462 60.2
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.0e-145 520.0 389 66.8
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 4.5e-145 518.8 387 66.9
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 5.9e-145 518.5 463 58.7
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.2e-144 516.5 460 65.7
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.9e-144 516.2 389 67.6
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 2.5e-143 513.1 465 64.1
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 3.6e-142 509.2 464 64.4
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.4e-141 507.3 461 64.0
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 7.4e-140 501.5 385 74.8
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 3.7e-139 499.2 443 67.0
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 1.4e-138 497.3 389 64.8
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 1.5e-137 493.8 459 64.5
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 5.2e-133 478.8 384 72.7
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 4.2e-127 459.1 462 58.9
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.8e-125 453.8 461 60.7
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 8.8e-117 424.9 463 55.3
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.0e-112 411.4 364 60.7
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.3e-111 406.4 471 50.3
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 2.0e-97 360.5 315 60.0
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 5.0e-96 355.9 462 46.3
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.3e-93 347.1 336 58.3
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.7e-75 287.7 291 61.5
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.4e-67 258.8 405 38.0
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 7.3e-63 245.7 390 39.0
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.1e-55 221.9 241 49.8
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.2e-49 201.8 189 60.8
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 1.3e-48 198.4 506 36.6
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 4.5e-44 183.3 406 31.0
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.4e-43 179.1 150 64.0
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.5e-41 173.7 123 69.1
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 6.1e-41 172.9 504 33.5
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.3e-38 165.2 163 57.1
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.0e-35 153.3 227 42.3
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-34 152.1 121 66.1
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 4.2e-34 150.2 208 45.2
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.7e-22 110.5 220 35.5
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 5.0e-19 100.1 91 59.3
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.6e-17 95.1 100 76.0
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 6.1e-17 93.2 68 70.6
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 1.0e-16 92.4 84 58.3
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.7e-14 85.1 55 80.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.7e-11 75.1 59 64.4
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 2.5e-10 71.2 414 22.9
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 4.2e-10 70.5 60 60.0
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 2.1e-09 68.2 271 26.6
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 3.6e-09 67.4 67 50.7
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.8e-08 65.1 62 56.5
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 3.0e-08 64.3 61 55.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 4.0e-08 63.9 111 39.6
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 6.8e-08 63.2 277 26.7
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 8.8e-08 62.8 49 73.5
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.5e-07 62.0 97 44.3
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 3.4e-07 60.8 309 23.0
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 3.4e-07 60.8 405 22.0
MCO16G505 Micromonas commoda HOM05D004145 ORTHO05D004879 4.4e-07 60.5 281 26.3
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 5.7e-07 60.1 268 25.0
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 7.5e-07 59.7 403 20.8
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 7.5e-07 59.7 465 23.7
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 7.5e-07 59.7 394 21.8
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 9.7e-07 59.3 272 23.9
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 1.3e-06 58.9 409 22.2
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 2.2e-06 58.2 272 25.4
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 2.8e-06 57.8 274 25.2
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 3.7e-06 57.4 403 20.3
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 6.3e-06 56.6 305 23.0
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 6.3e-06 56.6 63 50.8
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 8.3e-06 56.2 270 25.9
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 8.3e-06 56.2 271 24.7


User provided reference genes

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