Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 0.0e+00 1323.1 683 100.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.9e-295 1018.8 574 89.9
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 2.2e-291 1005.4 575 89.7
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 3.7e-283 978.0 574 86.6
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 7.2e-279 963.8 574 86.9
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.9e-277 958.0 575 84.9
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.5e-276 956.1 573 84.5
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 2.6e-276 955.3 574 84.5
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.8e-274 949.1 599 80.8
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.9e-271 939.1 575 83.3
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 7.2e-271 937.2 575 83.0
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.0e-269 933.3 574 82.2
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.8e-269 932.6 575 83.7
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.3e-269 932.2 574 81.9
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.0e-269 931.4 574 81.5
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 6.7e-269 930.6 574 81.5
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.0e-268 929.1 575 82.1
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 2.6e-268 928.7 574 81.5
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 7.5e-268 927.2 575 82.1
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 7.5e-268 927.2 574 81.2
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 9.7e-268 926.8 575 81.9
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.7e-267 926.0 574 81.2
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.8e-267 925.2 575 81.7
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-266 922.9 574 80.8
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.4e-266 922.2 575 81.7
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 9.1e-266 920.2 575 80.3
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.2e-265 919.8 574 80.7
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.2e-265 919.8 575 81.6
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 2.0e-265 919.1 575 80.7
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 3.5e-265 918.3 574 80.0
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 4.5e-265 917.9 575 80.5
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.0e-264 916.8 575 81.0
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.3e-264 916.4 574 80.1
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 2.2e-264 915.6 574 80.7
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 2.2e-264 915.6 575 80.5
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.1e-263 913.3 578 80.6
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.5e-263 911.0 584 78.9
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.2e-262 909.8 576 81.6
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.7e-262 908.7 613 77.0
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 4.7e-262 907.9 574 80.1
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.3e-261 905.6 574 79.6
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 3.0e-261 905.2 575 79.7
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 8.8e-261 903.7 574 79.3
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.4e-260 901.7 575 79.7
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 5.7e-260 901.0 574 79.3
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-259 899.8 585 78.1
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 3.7e-259 898.3 574 78.6
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.1e-258 896.7 574 78.2
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 3.1e-258 895.2 574 78.6
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 3.1e-258 895.2 574 78.2
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 4.1e-258 894.8 572 78.3
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 5.4e-258 894.4 574 77.7
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.2e-257 893.3 572 78.0
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 3.5e-257 891.7 574 78.2
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 5.9e-257 891.0 575 78.1
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 7.7e-257 890.6 601 76.2
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.7e-256 889.4 540 82.4
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.7e-256 889.4 574 78.4
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 3.8e-256 888.3 574 78.6
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 4.2e-255 884.8 574 78.6
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.2e-254 883.2 710 67.5
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.0e-253 880.2 601 74.7
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.4e-253 879.8 574 78.4
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.8e-253 879.4 574 77.4
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 4.0e-253 878.2 607 74.3
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.2e-252 876.7 574 76.8
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.4e-252 875.2 576 77.1
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 9.8e-252 873.6 574 78.2
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 1.7e-251 872.8 574 77.7
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 4.9e-251 871.3 575 76.5
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 4.9e-251 871.3 575 76.5
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.2e-249 866.7 576 76.6
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 5.9e-249 864.4 574 76.1
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 5.9e-249 864.4 575 76.7
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 3.8e-248 861.7 575 76.3
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 5.0e-248 861.3 573 76.1
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 1.2e-246 856.7 574 75.8
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.0e-245 853.6 639 69.8
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.4e-245 853.2 588 74.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.8e-245 852.8 580 75.2
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.3e-245 852.4 575 76.3
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.6e-241 839.7 575 72.9
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.6e-241 839.7 580 74.0
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.5e-241 838.6 516 80.8
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.3e-240 835.9 516 80.4
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.7e-233 812.4 590 72.0
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 3.0e-232 808.9 575 71.1
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 6.2e-230 801.2 574 72.1
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 4.3e-223 778.5 575 70.8
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 5.4e-218 761.5 576 66.1
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 4.3e-215 751.9 468 80.6
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 6.2e-214 748.0 540 71.7
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.8e-211 738.8 580 67.6
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 3.9e-208 728.8 470 79.1
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 3.3e-207 725.7 553 70.3
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.9e-203 711.8 557 68.0
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.3e-200 703.7 575 60.2
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 9.3e-194 681.0 579 59.2
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 3.8e-187 659.1 403 81.4
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 9.3e-186 654.4 574 57.3
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.4e-168 597.4 602 51.5
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.4e-151 539.3 576 49.0
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.6e-143 513.5 576 47.0
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.3e-142 511.1 318 81.8
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.7e-139 500.7 318 80.2
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 2.8e-137 493.4 364 67.9
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.4e-133 481.1 299 82.3
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 5.4e-133 479.2 445 61.6
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 5.6e-122 442.6 350 67.1
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 4.9e-110 402.9 569 43.6
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 5.4e-109 399.4 482 44.4
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-105 388.3 374 59.1
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.3e-91 340.9 241 74.3
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 4.2e-77 293.5 414 46.9
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 6.7e-75 286.2 175 82.3
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.9e-74 284.6 171 84.8
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.5e-68 263.8 206 66.5
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.1e-56 224.2 133 84.2
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 4.7e-52 210.3 117 88.0
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 2.9e-46 191.0 151 66.2
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 2.9e-46 191.0 122 78.7
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.2e-44 185.7 105 81.9
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.0e-43 182.6 138 64.5
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 5.2e-43 180.3 106 82.1
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 5.5e-37 160.2 178 52.8
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 9.4e-37 159.5 101 78.2
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.1e-36 156.8 109 71.6
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-28 132.1 86 77.9
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 4.0e-27 127.5 106 54.7
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 3.4e-26 124.4 138 55.1
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.7e-23 114.8 84 70.2
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.5e-21 108.2 59 79.7
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.5e-21 108.2 59 79.7
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 9.5e-21 106.3 58 82.8
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 3.6e-20 104.4 117 59.0
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.5e-18 99.0 59 74.6
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.5e-18 99.0 59 74.6
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 4.4e-18 97.4 76 71.1
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 5.4e-16 90.5 62 75.8
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 4.5e-15 87.4 56 67.9
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.7e-14 85.5 50 74.0
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 4.4e-10 70.9 51 58.8
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 2.9e-09 68.2 80 46.2
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.1e-08 66.2 46 78.3
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.2e-08 64.7 38 73.7
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 4.6e-07 60.8 89 47.2


User provided reference genes

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