Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 2.6e-138 495.4 243 100.0
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 4.9e-105 384.8 236 79.7
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 2.8e-100 369.0 244 75.4
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 4.3e-93 345.1 246 70.3
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 9.6e-93 344.0 249 71.5
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 2.9e-89 332.4 223 75.3
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 9.3e-88 327.4 243 68.3
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 2.1e-87 326.2 243 68.3
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 2.7e-87 325.9 243 68.3
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 7.9e-87 324.3 240 67.5
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 1.1e-85 320.5 241 67.6
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 7.4e-85 317.8 243 66.3
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 9.6e-85 317.4 238 68.9
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 1.3e-84 317.0 243 66.7
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 2.8e-84 315.8 244 66.0
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 3.7e-84 315.5 230 68.7
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 2.0e-82 309.7 229 69.4
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 2.0e-82 309.7 243 65.0
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 4.5e-82 308.5 243 65.4
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 5.8e-82 308.1 243 65.0
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 5.8e-82 308.1 243 65.0
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 7.6e-82 307.8 240 65.8
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 7.6e-82 307.8 242 63.2
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 1.3e-81 307.0 243 65.0
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 1.3e-81 307.0 227 67.4
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 1.7e-81 306.6 229 69.0
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 2.2e-81 306.2 245 64.5
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 4.9e-81 305.1 229 68.6
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 1.9e-80 303.1 244 62.3
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 2.5e-80 302.8 243 64.2
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 4.2e-80 302.0 240 65.8
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 9.3e-80 300.8 223 70.0
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 3.5e-79 298.9 245 63.3
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 3.5e-79 298.9 243 63.0
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 6.0e-79 298.1 234 66.2
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 1.0e-78 297.4 239 63.6
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 1.3e-78 297.0 266 60.2
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 1.1e-77 293.9 238 65.5
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 3.3e-77 292.4 224 65.6
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 3.3e-77 292.4 219 65.3
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 4.3e-77 292.0 222 65.8
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 4.3e-77 292.0 220 66.8
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 4.3e-77 292.0 220 66.8
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 9.6e-77 290.8 227 66.1
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 1.3e-76 290.4 222 65.3
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 1.6e-76 290.0 222 65.3
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 3.7e-76 288.9 242 59.5
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 3.7e-76 288.9 226 65.9
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 6.2e-76 288.1 241 61.0
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 1.1e-75 287.3 243 60.9
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 1.1e-75 287.3 224 67.4
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 3.1e-75 285.8 223 64.1
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 5.3e-75 285.0 223 64.1
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 1.2e-74 283.9 223 65.0
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 1.2e-74 283.9 223 65.0
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 1.2e-74 283.9 231 63.6
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 1.5e-74 283.5 223 64.1
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 1.5e-74 283.5 223 64.1
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 1.5e-74 283.5 223 65.5
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 2.0e-74 283.1 249 59.0
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 2.6e-74 282.7 223 64.6
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 3.4e-74 282.3 243 61.7
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 4.5e-74 282.0 242 61.2
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 5.8e-74 281.6 240 60.4
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 3.8e-73 278.9 236 61.0
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 8.4e-73 277.7 222 63.5
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 1.4e-72 276.9 245 58.4
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 3.2e-72 275.8 206 66.5
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 2.1e-71 273.1 249 58.2
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 2.1e-71 273.1 249 58.2
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 2.1e-71 273.1 232 61.6
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 4.6e-71 271.9 209 67.5
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 6.1e-71 271.6 310 49.7
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 1.3e-70 270.4 202 65.3
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 2.3e-70 269.6 234 61.5
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 3.0e-70 269.2 208 65.4
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 3.0e-70 269.2 196 68.4
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 1.5e-69 266.9 206 67.5
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 1.3e-68 263.8 216 63.4
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.4e-67 260.4 255 56.5
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.2e-66 257.3 160 79.4
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 1.7e-65 253.4 256 55.5
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 2.9e-65 252.7 188 68.1
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 1.1e-64 250.8 208 61.5
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 1.4e-64 250.4 205 62.0
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 3.2e-64 249.2 187 66.3
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 3.9e-62 242.3 156 73.7
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 3.9e-62 242.3 246 58.1
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 2.5e-61 239.6 173 66.5
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 1.1e-59 234.2 163 74.8
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 4.1e-59 232.3 141 79.4
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 1.2e-58 230.7 179 64.2
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 3.4e-58 229.2 177 68.4
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 2.9e-57 226.1 183 67.2
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 5.9e-50 201.8 197 56.3
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 1.0e-38 164.5 107 72.9
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 5.2e-38 162.2 128 59.4
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 7.5e-37 158.3 133 58.6
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 8.0e-31 138.3 94 72.3
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 1.3e-25 120.9 109 62.4
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 5.5e-24 115.5 101 60.4
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.4e-22 110.9 139 47.5
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 4.0e-22 109.4 96 57.3
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 2.7e-18 96.7 54 81.5
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 9.5e-16 88.2 60 73.3
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.2e-10 71.2 81 46.9
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 2.1e-07 60.5 56 58.9


User provided reference genes

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