Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 7.2e-91 337.4 194 100.0
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 4.7e-66 255.0 194 82.5
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 5.2e-57 224.9 194 65.5
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 8.8e-57 224.2 194 74.2
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 1.2e-53 213.8 194 67.5
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 5.9e-53 211.5 197 61.9
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 1.2e-45 187.2 194 63.9
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 2.0e-45 186.4 191 56.5
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 4.6e-45 185.3 194 56.2
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 5.0e-44 181.8 193 61.1
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 6.6e-44 181.4 189 57.1
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 1.5e-43 180.3 195 55.9
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.5e-43 180.3 189 57.1
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 4.3e-43 178.7 194 60.8
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 1.0e-41 174.1 197 52.8
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 3.1e-41 172.6 194 54.6
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 2.6e-40 169.5 195 52.3
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.3e-39 167.2 194 55.2
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 4.9e-39 165.2 194 55.2
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 8.3e-39 164.5 193 50.3
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 1.4e-38 163.7 186 53.8
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 1.9e-38 163.3 195 51.8
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 2.4e-38 162.9 196 48.5
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 5.4e-38 161.8 186 57.5
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 5.4e-38 161.8 189 58.7
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 7.0e-38 161.4 194 51.0
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 9.2e-38 161.0 187 51.3
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 9.2e-38 161.0 189 51.9
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 1.6e-37 160.2 192 49.5
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 2.0e-37 159.8 188 52.1
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 3.5e-37 159.1 188 50.5
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 4.6e-37 158.7 195 53.8
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 6.0e-37 158.3 192 48.4
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 6.0e-37 158.3 192 52.1
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 1.0e-36 157.5 192 49.0
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 2.3e-36 156.4 192 51.0
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 3.9e-36 155.6 194 49.0
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 3.9e-36 155.6 199 49.2
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 5.0e-36 155.2 192 52.6
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 6.6e-36 154.8 195 50.3
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 8.6e-36 154.5 188 50.0
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 1.1e-35 154.1 193 49.7
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 1.1e-35 154.1 189 49.7
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 1.5e-35 153.7 195 47.2
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 4.3e-35 152.1 189 50.3
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 5.6e-35 151.8 193 53.4
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 9.5e-35 151.0 189 48.1
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 1.2e-34 150.6 192 52.1
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.2e-34 150.6 191 48.2
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.2e-34 150.6 191 49.2
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.6e-34 150.2 194 47.9
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.6e-34 150.2 194 47.9
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.1e-34 149.8 194 47.9
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 2.1e-34 149.8 208 49.0
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 3.6e-34 149.1 192 54.2
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 4.7e-34 148.7 186 48.4
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 8.1e-34 147.9 189 47.6
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.1e-33 147.5 190 55.3
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 1.4e-33 147.1 192 53.6
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.8e-33 146.7 187 50.8
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.8e-33 146.7 191 56.0
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.8e-33 146.7 185 49.7
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 5.2e-33 145.2 155 54.2
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 5.2e-33 145.2 190 48.4
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 2.0e-32 143.3 185 48.6
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 3.4e-32 142.5 188 45.2
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 3.4e-32 142.5 195 46.7
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 4.4e-32 142.1 196 51.5
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 5.8e-32 141.7 193 43.0
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 1.3e-31 140.6 194 50.0
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 2.2e-31 139.8 186 51.1
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 2.9e-31 139.4 181 47.5
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 1.4e-30 137.1 185 47.0
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 3.2e-30 136.0 166 59.6
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 4.1e-30 135.6 192 49.0
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 5.4e-30 135.2 186 48.4
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 7.1e-30 134.8 192 46.4
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 9.2e-30 134.4 192 43.2
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 1.2e-29 134.0 198 44.4
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 3.5e-29 132.5 193 42.5
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 1.7e-28 130.2 192 43.2
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 2.3e-28 129.8 195 48.2
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 3.0e-28 129.4 185 47.0
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 3.0e-28 129.4 192 44.8
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 6.6e-28 128.3 183 44.3
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 1.2e-26 124.0 194 45.9
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 1.1e-25 120.9 176 42.0
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 6.8e-25 118.2 183 43.2
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.2e-24 117.5 196 40.8
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 2.0e-24 116.7 180 45.0
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 9.9e-24 114.4 191 41.9
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 1.3e-23 114.0 176 40.9
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 2.2e-23 113.2 178 43.3
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 3.8e-23 112.5 178 43.3
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.1e-22 110.9 186 41.4
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 2.4e-22 109.8 190 40.5
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 5.4e-22 108.6 188 39.9
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 5.4e-22 108.6 188 39.9
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 5.4e-22 108.6 185 40.5
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 5.4e-22 108.6 178 42.1
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 5.4e-22 108.6 175 40.0
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 1.2e-21 107.5 179 40.8
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 1.2e-21 107.5 182 41.8
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 1.6e-21 107.1 175 42.9
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 2.7e-21 106.3 185 41.6
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 4.6e-21 105.5 186 39.2
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 2.3e-20 103.2 91 58.2
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 2.3e-20 103.2 91 58.2
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 3.9e-20 102.4 187 38.5
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 5.1e-20 102.1 169 40.2
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 6.6e-20 101.7 192 40.1
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 1.1e-19 100.9 169 39.6
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 1.9e-19 100.1 169 39.6
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.9e-19 100.1 191 38.2
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 2.5e-19 99.8 169 40.2
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 4.3e-19 99.0 153 44.4
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 7.3e-19 98.2 169 38.5
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 7.3e-19 98.2 190 38.4
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 7.3e-19 98.2 190 38.4
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 7.3e-19 98.2 192 38.0
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 9.6e-19 97.8 190 39.5
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.2e-18 97.4 158 38.0
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 1.6e-18 97.1 162 40.7
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 2.1e-18 96.7 190 38.9
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 2.1e-18 96.7 190 38.9
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 3.6e-18 95.9 185 37.8
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 6.2e-18 95.1 174 37.4
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 4.0e-17 92.4 164 39.6
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 5.2e-17 92.0 170 38.8
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 1.2e-16 90.9 187 37.4
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 1.5e-16 90.5 167 37.1
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 2.6e-16 89.7 166 38.6
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 9.9e-16 87.8 185 34.1
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 1.3e-15 87.4 128 43.8
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 3.8e-15 85.9 167 35.3
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 3.2e-14 82.8 167 37.7
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 7.1e-14 81.6 185 37.8
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 9.3e-14 81.3 116 57.8
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 2.1e-13 80.1 194 34.0
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 2.7e-13 79.7 182 36.8
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 3.5e-13 79.3 180 35.6
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 7.8e-13 78.2 168 36.3
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.8e-13 78.2 180 35.0
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 7.8e-13 78.2 75 53.3
Glyma.14G148600 Glycine max HOM05D004226 ORTHO05D004842 1.0e-12 77.8 72 54.2
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 1.3e-12 77.4 194 29.9
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 1.7e-12 77.0 190 33.2
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 1.7e-12 77.0 181 37.0
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 3.0e-12 76.3 88 50.0
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 6.6e-12 75.1 180 33.9
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 6.6e-12 75.1 180 33.9
Duzib147G0221 Durio zibethinus HOM05D004226 ORTHO05D004842 1.3e-10 70.9 152 33.6
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 1.3e-10 70.9 93 48.4
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 1.6e-10 70.5 189 27.5
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 5.3e-09 65.5 165 31.5
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 2.6e-08 63.2 130 36.9
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 3.4e-08 62.8 118 39.0
Nn4g25974 Nelumbo nucifera HOM05D066638 ORTHO05D004842 5.8e-08 62.0 61 55.7
SEGI_39221 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 5.8e-08 62.0 81 45.7
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 7.6e-08 61.6 98 41.8
Nn7g37876 Nelumbo nucifera HOM05D001231 ORTHO05D001012 9.9e-08 61.2 60 56.7
SEGI_14551 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.7e-07 60.5 58 53.4
SEGI_24806 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 1.7e-07 60.5 58 53.4
Nn7g37465 Nelumbo nucifera HOM05D004226 ORTHO05D004842 2.9e-07 59.7 61 49.2
Ciclev10023033m.g Citrus clementina HOM05D004226 ORTHO05D004842 9.3e-06 54.7 51 56.9


User provided reference genes

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