Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 9.6e-245 849.7 435 100.0
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 2.4e-171 605.9 425 74.6
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 1.5e-168 596.7 424 73.8
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 1.0e-153 547.4 425 69.6
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 3.0e-153 545.8 434 66.4
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.9e-147 526.6 426 67.6
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.1e-145 518.5 418 65.6
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 6.6e-145 518.1 417 65.7
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.5e-144 516.9 431 64.5
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.3e-144 515.8 434 65.0
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 6.2e-143 511.5 424 65.8
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 8.1e-143 511.1 419 64.9
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.8e-142 510.0 424 65.3
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 3.1e-142 509.2 435 63.2
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.3e-142 508.4 434 64.1
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 9.0e-142 507.7 424 64.4
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.2e-141 507.3 432 64.1
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 2.6e-141 506.1 434 63.6
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.8e-141 505.0 426 64.3
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 7.6e-141 504.6 424 63.9
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.9e-140 502.7 429 64.6
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.9e-140 502.7 370 69.2
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 3.8e-140 502.3 434 63.1
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.1e-139 500.7 377 67.6
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-139 499.6 426 63.6
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 5.4e-139 498.4 435 63.0
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.4e-139 498.4 434 62.7
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.1e-138 496.5 432 63.2
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 6.0e-138 495.0 425 62.8
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.9e-138 494.6 434 63.4
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.3e-137 493.8 410 65.4
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.8e-137 493.4 425 63.8
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.0e-137 492.7 407 64.1
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.1e-136 490.7 427 63.7
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 1.5e-136 490.3 338 74.6
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 1.5e-136 490.3 424 60.8
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 2.5e-136 489.6 436 62.2
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.5e-136 489.6 437 61.6
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.3e-135 487.3 437 62.5
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.6e-135 486.9 422 62.8
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-135 486.1 430 60.2
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 3.7e-135 485.7 430 60.2
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 1.1e-134 484.2 429 61.1
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 4.0e-134 482.3 432 62.0
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.0e-134 482.3 392 63.8
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.5e-133 480.3 427 61.6
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.5e-133 480.3 453 58.5
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.8e-133 478.4 430 59.8
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.3e-132 477.2 452 58.6
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 3.8e-132 475.7 426 60.3
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 3.8e-132 475.7 431 60.1
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.4e-132 474.9 433 59.8
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 1.1e-131 474.2 423 60.8
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.4e-131 473.8 423 59.8
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 4.2e-131 472.2 422 58.8
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 5.5e-131 471.9 423 60.0
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 2.1e-130 469.9 391 63.2
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 2.7e-130 469.5 434 60.6
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 6.0e-130 468.4 367 66.2
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 1.0e-129 467.6 335 71.0
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.3e-129 467.2 424 62.0
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 8.7e-129 464.5 437 58.4
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.5e-128 463.0 426 60.6
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 3.3e-128 462.6 425 59.1
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 3.3e-128 462.6 414 60.1
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 9.6e-128 461.1 334 70.4
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 2.1e-127 459.9 424 59.7
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 6.2e-127 458.4 428 58.4
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 6.2e-127 458.4 432 57.9
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 6.2e-127 458.4 335 69.3
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 6.2e-127 458.4 422 60.0
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 8.2e-127 458.0 437 57.2
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.2e-127 458.0 426 60.3
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 2.4e-126 456.4 386 61.1
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 5.3e-126 455.3 437 57.2
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 1.2e-125 454.1 354 66.1
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.5e-125 453.8 341 66.6
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 2.2e-124 449.9 521 49.7
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 4.9e-124 448.7 427 56.9
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 4.9e-124 448.7 354 65.5
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 6.5e-124 448.4 440 56.1
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 2.1e-122 443.4 390 61.3
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 3.5e-122 442.6 429 58.0
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 3.5e-122 442.6 430 59.1
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 3.5e-122 442.6 400 60.8
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 4.6e-122 442.2 429 58.3
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 6.1e-122 441.8 425 58.4
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 1.0e-121 441.0 428 57.9
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 3.9e-121 439.1 382 63.4
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.5e-120 436.4 372 61.8
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.4e-120 434.9 422 55.9
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 6.3e-119 431.8 332 66.0
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 6.3e-119 431.8 430 57.4
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 5.3e-118 428.7 422 57.1
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.5e-117 427.2 335 63.9
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 2.6e-117 426.4 425 57.4
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 4.5e-117 425.6 422 55.2
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.9e-117 425.2 379 60.7
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 1.2e-114 417.5 407 55.5
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 6.9e-110 401.7 336 62.2
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.3e-108 397.5 362 59.1
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.1e-98 363.6 431 50.6
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 2.0e-88 330.5 253 65.6
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-71 274.2 217 65.4
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 1.0e-68 265.0 367 46.0
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 5.6e-59 232.6 157 70.1
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 4.0e-57 226.5 255 50.6
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 8.3e-55 218.8 128 83.6
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 1.0e-52 211.8 287 47.7
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 2.6e-48 197.2 233 50.6
Oeu010081.1 Olea europaea HOM05D003094 ORTHO05D003482 4.4e-48 196.4 139 71.2
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 9.2e-46 188.7 230 47.0
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 1.3e-31 141.7 108 65.7
Mapoly0002s0206 Marchantia polymorpha HOM05D003094 ORTHO05D003482 6.4e-31 139.4 116 61.2
Gohir.A06G136104 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.3e-27 127.1 101 64.4
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 2.8e-26 124.0 177 45.8
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 2.4e-25 120.9 139 51.1
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.4e-23 112.5 231 36.8
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 7.1e-22 109.4 84 65.5
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.1e-21 107.8 127 50.4
Gorai.011G161100 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.7e-20 102.4 80 65.0
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-19 101.3 127 49.6
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 3.3e-19 100.5 157 43.3
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 3.3e-19 100.5 170 40.0
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 4.3e-19 100.1 157 42.7
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 9.6e-19 99.0 117 47.9
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.2e-18 96.3 123 49.6
Gohir.D10G144200 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-17 95.5 78 61.5
Nn3g17957 Nelumbo nucifera HOM05D003094 ORTHO05D003482 2.4e-17 94.4 77 63.6
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.1e-17 94.0 72 65.3
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 1.2e-16 92.0 72 63.9
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.6e-16 89.4 72 61.1
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.6e-16 89.4 73 60.3
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 7.6e-16 89.4 161 36.0
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-15 89.0 73 61.6
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-14 85.5 73 60.3
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.2e-13 82.0 188 37.2
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 3.9e-12 77.0 188 33.0
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.1e-12 76.6 97 42.3
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 6.7e-12 76.3 108 40.7
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 1.1e-11 75.5 159 35.2
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.3e-11 73.9 108 40.7
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 7.4e-11 72.8 186 33.3
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 9.6e-11 72.4 83 45.8
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.8e-10 70.1 97 41.2
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 4.8e-10 70.1 91 47.3
Nitab4.5_0008639g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002324 4.8e-10 70.1 70 52.9
Aqoxy1G00910 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 6.3e-10 69.7 161 37.3
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.2e-10 69.3 80 48.8
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.1e-09 68.9 80 50.0
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 1.1e-09 68.9 153 34.6
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-09 68.2 80 47.5
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.8e-09 68.2 80 47.5
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 5.3e-09 66.6 167 34.1
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 9.0e-09 65.9 157 31.8
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.0e-08 64.7 176 33.0
PRCOL_00003227 Prasinoderma coloniale HOM05D003094 ORTHO05D003482 5.9e-08 63.2 99 38.4
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 7.6e-08 62.8 117 41.0
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 1.0e-07 62.4 124 40.3
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 1.0e-07 62.4 172 30.8
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 2.2e-07 61.2 77 44.2
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.9e-07 60.8 68 48.5
MCO03G327 Micromonas commoda HOM05D003094 ORTHO05D003482 3.8e-07 60.5 92 38.0
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 3.8e-07 60.5 173 31.8
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 5.0e-07 60.1 132 40.2
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.5e-07 59.7 98 35.7
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 8.4e-07 59.3 100 38.0
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.4e-06 58.5 109 40.4
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 1.4e-06 58.5 161 33.5
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.4e-06 58.5 102 39.2
BcaC08g46948 Brassica carinata HOM05D003094 ORTHO05D003482 1.9e-06 58.2 75 44.0
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 1.9e-06 58.2 164 31.7
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 2.5e-06 57.8 169 32.5
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.5e-06 57.8 102 40.2
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 2.5e-06 57.8 141 31.9
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 3.2e-06 57.4 123 35.0
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 3.2e-06 57.4 159 32.7
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 3.2e-06 57.4 92 33.7
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 3.2e-06 57.4 69 47.8
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 3.2e-06 57.4 70 42.9
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 7.2e-06 56.2 107 34.6
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 7.2e-06 56.2 83 37.3
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 9.3e-06 55.8 69 47.8


User provided reference genes

Program Settings